There might be some issues with jpeg compressed dicom files in 7.2 and
before. Can you try using 7.3 to do the conversion with mri_convert or
dcmunpack (add -dcm2niix to either one to get the new, better code).
On 9/5/2022 10:53 PM, Beatrice Everall wrote:
External Email - Use Caution
# Hi there :)
# I am trying to run recon-all on MRI data; I have multiple sequences
including T1 maps and MAGiC. I have tried to run recon-all on these
sequences but get the same error each time:
#
# ERROR: 512, see /tmp/tmp.H88WWu.dcmdjpeg.out for more details
#
# However when looking in that location I only see a H88WWu file, not
H88WWu.dcmdjpeg.out.
# I am using the Ubuntu 18.04 VM with the 7.2.0 release.
#
# Attached is the recon-all.log.
#
# Any suggestions would be very appreciated!
# Thanks
# Beatrice
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