It is not clear what is going wrong as there is not really an error
message.Was there anything printed to the terminal that is not in the
log file? The last thing it did was to write out
mri/aparc.DKTatlas+aseg.mgz. Can you check that and see if it looks ok?
Did you run out of space on the disk?
On 9/10/2022 4:06 PM, Estephan Moana Filho wrote:
External Email - Use Caution
Hello, I am using QuNex to process MRI data with the HCP pipelines. I
was able to complete the hcp_pre_freesurfer without problems, but I am
having trouble completing the hcp_freesurfer step. I tried processing
10 participants, and they all fail after several hours of processing.
The qunex log reports the error "ERROR: recon-all command failed with
return_code: 1". The recon-all.log is not clear about what went wrong
(at least to me). See attached the log file.
Please let me know your thoughts on this. Thank you.
Estephan
--
Estephan J. Moana-Filho, DDS, MS, PhD
Assistant Professor
Division of TMD, Orofacial Pain and Dental Sleep Medicine
Graduate Faculty in Oral Biology
Department of Diagnostic and Biological Sciences
UMN School of Dentistry
moana...@umn.edu
6-320d Moos Tower
515 Delaware St. SE
Minneapolis, MN 55455-0329
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--
Estephan J. Moana-Filho, DDS, MS, PhD
Assistant Professor
Division of TMD, Orofacial Pain and Dental Sleep Medicine
Graduate Faculty in Oral Biology
Department of Diagnostic and Biological Sciences
UMN School of Dentistry
moana...@umn.edu
6-320d Moos Tower
515 Delaware St. SE
Minneapolis, MN 55455-0329
Office: (612) 624-3338 Clinic: (612) 626-0140 Fax: (612) 626-0138
Clinical referrals: z.umn.edu/TMDrefer
<http://secure-web.cisco.com/1jGKrgFMOWmeE4U_11UxM0NpWQzr42BtSye9O1IDa5pcQD0SRbZ2kpXWaiS3rKJkyg5IZjLHErMjnKJu_uOswHysnLnvTkE8WGpS5mitLzRe-LNGQnNOS6NCwpGV0QTrO2o9LHRik8GAOaHZi1GT7YqHJbvcLSdhrqT6vBU0kMZbxAavy9yjYhZ5MQiloYFyFS6prlZWstdCQAtnwGaAzLMddF-lnG8fHmlIUutQaR1TALUdnlWG5kkm6aaEvDE8RoMFqqFpKDlZ7v2rI1WwsCekrpG6y2mX1yiJaTt--fkt_hL-VmRj1mNSr12OPlmNZ/http%3A%2F%2Fz.umn.edu%2FTMDrefer>
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