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I am trying use segmentHA_T1.sh: During the registration of imageDump.mgz to target hippoAmygBinaryMask_autoCropped.mgz, I get the warning: * WARNING: Registration did not converge in 5 steps! * Problem might be ill posed. * Please inspect output manually! Also I can’t seem to find „imageDump_coregistered.mgz“, to check the aligned result (as advised in the log file) The script runs fine and the outputs look ok, too; still I was wondering what is going wrong here. Many Thanks in advance! Tom _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
