External Email - Use Caution Hello,
I'm just checking to see if you have received the images and if you are still working on my issue? I don't think I got any more replies from you and just want to make sure if you're still working on it. Best, Adriana ________________________________ From: Jorge, Adriana (ARTORG) Sent: Friday, January 13, 2023 12:16:19 PM To: Freesurfer support list Subject: Re: [Freesurfer] Fw: error: Numerical argument out of domain; error: MRIhistogramLabelRegion: constant image\00 Hello, Yes, of course. I trust you won't share the images, please. Best, Adriana ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Huang, Yujing <yhuan...@mgh.harvard.edu> Sent: Wednesday, January 11, 2023 3:50:39 PM To: Freesurfer support list Subject: Re: [Freesurfer] Fw: error: Numerical argument out of domain; error: MRIhistogramLabelRegion: constant image\00 Hi Adriana, Is it possible for you to share the T1 and T2 images so we can debug it? Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of adriana.jo...@unibe.ch Sent: Tuesday, January 10, 2023 8:53 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Fw: error: Numerical argument out of domain; error: MRIhistogramLabelRegion: constant image\00 External Email - Use Caution Hi FreeSurfer Developers, I'm trying to obtain brain parcellations/segmentations of a subject's brain, using T1 and T2 images, but when I execute the recon-all command, I get the following error message: error: Numerical argument out of domain error: MRIhistogramLabelRegion: constant image error: Numerical argument out of domain error: MRIhistogramLabelRegion: constant image Segmentation fault Linux sharky 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 GNU/Linux recon-all -s Test_withT2 exited with ERRORS at Tue Jan 10 13:17:00 CET 2023 The FreeSurfer version I'm currently using is the freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275, but I have also tried the exact same process (same command and same data) in the freesurfer-linux-ubuntu18_x86_64-7.3.0-20220718-7725d89 version and got the exact same error message. When I tried running the recon-all again with the freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b version, no error was reported and the recon-all outputs were correct. Recon-all works for versions reesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 and freesurfer-linux-ubuntu18_x86_64-7.3.0-20220718-7725d89 if I use only the T1 image. The recon-all logs for the 2 failed and the 1 successful attempts are attached here. Can you help me figure out what the issue is? Why can't I run the recon-all using both T1 and T2 in the latest versions? Best, Adriana Jorge
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