Freeview by default will display the image in its original pixel space, without re-sampling. You can try the -r flag to enable the resampling like this:
freeview foo.mgz -r -cubic Ruopeng On Feb 27, 2023, at 7:04 AM, Nathan Kindred (PGR) <n.kindr...@newcastle.ac.uk<mailto:n.kindr...@newcastle.ac.uk>> wrote: External Email - Use Caution Hi, Apologies for the delay, please find attached a screenshot of an example image in orient_mri and the same image in freeview. Best, Nathan From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Wang, Ruopeng <rwa...@mgh.harvard.edu<mailto:rwa...@mgh.harvard.edu>> Date: Wednesday, 22 February 2023 at 14:24 To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] Freeview displaying images in the wrong orientation ⚠ External sender. Take care when opening links or attachments. Do not provide your login details. Can you send us a screenshot or even better, a sample image file? Ruopeng > On Feb 22, 2023, at 7:34 AM, Nathan Kindred (PGR) > <n.kindr...@newcastle.ac.uk<mailto:n.kindr...@newcastle.ac.uk>> wrote: > > External Email - Use Caution > > Hi, > > When I am displaying certain images in freeview the orientation does not > match what is displayed in both orient_mri and SPM. The coronal and > horizontal views seems to be okay but the midsagittal view is often wrong > with the front of the brain tilted up. How do I get freeview to display the > images in the correct orientation? > > Thanks, > Nathan > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> > MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" > claiming to be > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=05%7C01%7CN.Kindred1%40newcastle.ac.uk%7Cb2d3fde0773a4f2134eb08db14e0895f%7C9c5012c9b61644c2a91766814fbe3e87%7C1%7C0%7C638126726826625504%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=V6Ss2RsllQBxhZ5gviNogt4lVtsLOPn6OYTQT%2Fx4YeM%3D&reserved=0<https://secure-web.cisco.com/1ZZZE1OxXpqeevorB7WNK9o7b844IdCaPcTBN6vkxTrcw2Gsiq9Xd_RsetqQCuHrQHr4eFGX8Cj8dJ4kUhxI8ed7sVYAuQK_8SmppkMoR6Z2ji7zWYKbzayV61eCMicBBsVjFPDoUW9P0GnBRAR07qYCLkHEe9lCtHpzmgs50J8-HtjveK7tTcY-1HGD8sdDAN-YbQUEqxmTdB7HRDnevqjkwFXN84YL9mnxuUUTYT6cIo6cNaDONOK6LVU-DMAVpU4uzyUHUaAWDS02c_k7jGR1irKLq3fyXJgyZVhwqYWTgvWXNXNo_6EBkzO7zNS68qgPXLtM92SsaZuPpPlw2fQ/https%3A%2F%2Feur03.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fmail.nmr.mgh.harvard.edu%252Fmailman%252Flistinfo%252Ffreesurfer%26data%3D05%257C01%257CN.Kindred1%2540newcastle.ac.uk%257Cb2d3fde0773a4f2134eb08db14e0895f%257C9c5012c9b61644c2a91766814fbe3e87%257C1%257C0%257C638126726826625504%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C3000%257C%257C%257C%26sdata%3DV6Ss2RsllQBxhZ5gviNogt4lVtsLOPn6OYTQT%252Fx4YeM%253D%26reserved%3D0> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=05%7C01%7CN.Kindred1%40newcastle.ac.uk%7Cb2d3fde0773a4f2134eb08db14e0895f%7C9c5012c9b61644c2a91766814fbe3e87%7C1%7C0%7C638126726826625504%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=V6Ss2RsllQBxhZ5gviNogt4lVtsLOPn6OYTQT%2Fx4YeM%3D&reserved=0<https://secure-web.cisco.com/1ZZZE1OxXpqeevorB7WNK9o7b844IdCaPcTBN6vkxTrcw2Gsiq9Xd_RsetqQCuHrQHr4eFGX8Cj8dJ4kUhxI8ed7sVYAuQK_8SmppkMoR6Z2ji7zWYKbzayV61eCMicBBsVjFPDoUW9P0GnBRAR07qYCLkHEe9lCtHpzmgs50J8-HtjveK7tTcY-1HGD8sdDAN-YbQUEqxmTdB7HRDnevqjkwFXN84YL9mnxuUUTYT6cIo6cNaDONOK6LVU-DMAVpU4uzyUHUaAWDS02c_k7jGR1irKLq3fyXJgyZVhwqYWTgvWXNXNo_6EBkzO7zNS68qgPXLtM92SsaZuPpPlw2fQ/https%3A%2F%2Feur03.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fmail.nmr.mgh.harvard.edu%252Fmailman%252Flistinfo%252Ffreesurfer%26data%3D05%257C01%257CN.Kindred1%2540newcastle.ac.uk%257Cb2d3fde0773a4f2134eb08db14e0895f%257C9c5012c9b61644c2a91766814fbe3e87%257C1%257C0%257C638126726826625504%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C3000%257C%257C%257C%26sdata%3DV6Ss2RsllQBxhZ5gviNogt4lVtsLOPn6OYTQT%252Fx4YeM%253D%26reserved%3D0> The information in this e-mail is intended only for the person to whom it is addressed. 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