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Hi FreeSurfers

We are looking at cortical thickness after spinal cord injury in a pooled 
sample from three sites. All have 1x1x1 mm T1. Our current approach has been to 
exclude noisy data (16/159 participants), and to account for scanner 
differences using site as dummy variables.

We are considering using SynthSR  for two purposes:

  1.  reduce motion artefacts in (some) scans
  2.  better merge data between different scanner sites

If using SynthSR for noise reduction seems like a good idea, is it best to then 
run SynthSR on ALL datasets for consistency?


Best
Clas Linnman





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