External Email - Use Caution Hi Ahsan,
Can you try mri_segstats? https://secure-web.cisco.com/1wVzy7KLutxPiR4iLqjyLUq0iSRD9LkzadSa3f-BddmWJwZhkTMZZ-niGuWQDB4CPBJjFYKLqoF5vufKPF4JHRnkOBaEjBkhWLlWD1iedtDlEux1A_UaBH0dR_K_Coi8YQtGgzJ1bMjoa9FJVR8kQveflPs6GyhgKBLAbCNFuRi_DyL29jJwou2NySw65NDpDEMM0rIxWw9jxVi4qx8NR_L3kHXo7--vAZaG4L01mKuWROCtnSJAFZRkHDsu6C39BoZFrfNRUCubwEVIKBnZxVA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Fmri_segstats Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Ahsan Ali Sent: Friday, June 9, 2023 10:08 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Generate Stats File for fornix.mgz in T1 weighted MRI ? External Email - Use Caution Hi, Please help me with this. With Regards Ahsan --------------------------------------------- Ahsan Ali Ph.D Scholar Department of Applied Mechanics and Biomedical Engineering (AMBE) Indian Institute of Technology Madras Chennai-600036, Tamil Nadu, INDIA Mob.:- +91-8899605552 On Fri, May 26, 2023 at 11:13 AM Ahsan Ali <ahsan889...@gmail.com<mailto:ahsan889...@gmail.com>> wrote: Dear Sir/Madam, I'm having a ADNI T1 weighted MRI database. I have run the recon-all command successfully and got a couple of default stats files in the stats folder. Then fornix.mgz is estimated using command "mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto_CCseg.mgz -f folder_name" successfully. Now what can be done to generate the stats for fornix.mgz? I've been struggling with this for a long time, please help me with this. I'm using ubuntu. [cid:image001.jpg@01D99D1B.6155A1A0] With Regards Ahsan --------------------------------------------- Ahsan Ali Ph.D Scholar Department of Applied Mechanics and Biomedical Engineering (AMBE) Indian Institute of Technology Madras Chennai-600036, Tamil Nadu, INDIA Mob.:- +91-8899605552
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