External Email - Use Caution Can you run the following at prompt?
'Applications/freesurfer/7.4.1/bin/lta_convert -all-info' I'm not a Mac user. Do you need '/' in front of 'Application'? Yujing From: [email protected] <[email protected]> On Behalf Of Misque Boswell Sent: Monday, July 3, 2023 11:44 AM To: Freesurfer support list <[email protected]> Subject: Re: [Freesurfer] Error Help External Email - Use Caution Hello Yujing, Thank you for your response. I followed the directions for setup and sourced SetUpFreeSurfer.sh as you stated. All goes as planned up to this point. Misques-MBP-3 / % export FREESURFER_HOME=Applications/freesurfer/7.4.1 Misques-MBP-3 / % source $FREESURFER_HOME/SetUpFreeSurfer.sh -------- freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME Applications/freesurfer/7.4.1 FSFAST_HOME Applications/freesurfer/7.4.1/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR Applications/freesurfer/7.4.1/subjects MNI_DIR Applications/freesurfer/7.4.1/mni FSL_DIR /Users/misqueboswell/fsl Can you check where your recon-all is and if lta_convert is in the distribution? 1. which recon-all Misques-MBP-3 / % which recon-all Applications/freesurfer/7.4.1/bin/recon-all 2. ls -l <recon-all_path>/lta_convert lta_convert executable is in the "Applications/freesurfer/7.4.1/bin/" (rwxr-xr-x 1 root wheel 2613752 Jun 13 21:21 lta_convert) Thank you again for your help! Misque On Jul 3, 2023, at 6:26 AM, Huang, Yujing <[email protected]<mailto:[email protected]>> wrote: Yujing
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