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Hi King-Wai/ Chiara

Thank you for your excellent suggestions.

Chiara: I have made the changes you suggested. Can you please check if the
config file looks workable?

King-Wai - I made the change you suggested. But the problem still persists.
I have attached the config file.

best,

Alan

On Tue, Jul 18, 2023 at 12:26 PM King-Wai Chu <kingwai....@gmail.com> wrote:

> Hi Alan,
>
> I think in your "set dcmlist", you are missing
> /home/alanfrancis/IMAGING/DTI/
> before 109123
> It should be
> set dcmlist =
> /home/alanfrancis/IMAGING/DTI/109123/109123_7T_DWI_dir72_AP_SBRef.nii.gz
>
> Best,
>
> King-Wai
>
> On Tue, Jul 18, 2023 at 12:59 PM Alan Francis <alandarkene...@gmail.com>
> wrote:
>
>> Hi King-Wai:
>>
>> I have been running Tracula on 7T images and it keeps giving me an error.
>> The error is as follows:
>>
>> copernicus:~/IMAGING/DTI> trac-all -prep -c dmrirc-109123_7T_2
>> Unmatched '"'.
>>
>> I have attached my config file. Can you please let me know what I am
>> doing wrong?
>>
>> Thanks,
>>
>> Alan
>> --
>> *|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|*
>>
>>
>>
>> *Alan N. Francis PhDAssistant Professor of NeuroscienceInstitute of
>> Neuroscience*
>> *University of Texas, School of Medicine*
>>
>> *Rio Grande Valley*
>>
>> *Texas.*
>>
>>
>>
>
>
> --
> King-Wai Chu, Ph.D.
> Program Analyst
> Mental Illness Research, Education and Clinical Center (MIRECC, VISN3)
> James J. Peters Dept. of Veterans Administration Medical Center (OOMH)
> 130 W. Kingsbridge Road
> Bronx, NY 10468
>


-- 
*|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|*



*Alan N. Francis PhDAssistant Professor of NeuroscienceInstitute of
Neuroscience*
*University of Texas, School of Medicine*

*Rio Grande Valley*

*Texas.*

Attachment: dmrirc-109123_7T_3
Description: Binary data

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