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Try adding --no-surfs
On 7/24/2023 12:45 PM, Viktorija Pratuseviciute wrote:
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Thank you very much! We did try the command tkregisterfv --s PI163
–fstal, however the recon-all processing fails before a surf/lh.white
file is created and therefore an error is produced that this file
can’t be found. Seems like with tkregisterfv the default is for it to
require the lh.white file?
Many thanks,
Viki
*From: *freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve
<dgr...@mgh.harvard.edu>
*Date: *Friday, July 21, 2023 at 6:28 AM
*To: *freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
*Subject: *Re: [Freesurfer] Tkregister2 GUI not responding fully
* External Email - Use Caution *
tkregister2 is pretty old at this point; try using tkregsiterfv with
the same option.
On 7/20/2023 7:06 PM, Viktorija Pratuseviciute wrote:
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Hello,
We are trying to process a scan with a failed talairach. We have
been able to visualize the misalignment and attempted to use the
following command (tkregister2 --s PI163 –fstal) to manual adjust
the talairach.xfm based on the tutorial
(FsTutorial/Talairach_freeview).
The tkregister2 GUI opens up, however only certain functions work:
I can switch between target and moveable, I can also double click
on sliding scales to switch coronal, saggital and horizontal
views, however I am not able to move any of the sliders including
the rotate or translate brain and hence unable to fix the
talairach. Is there a way to fix this issue? Or an alternative way
to fix the bad talairach output?
We are using freesurfer/7.3.1 and have attempted the command on
our server command line on both mac and windows with same results.
Many thanks,
Viki
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