External Email - Use Caution
________________________________
De : Hensenne, Eva (Stud. FHML) <e.hense...@student.maastrichtuniversity.nl>
Envoyé : mercredi 18 octobre 2023 14:41
À : freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Objet : Issues at the "tailarach_avi" transformation step of recon-all
Dear Freesurfer Developers,
I am currently running recon-all on a UNI scan. This scan has already been
partly preprocessed by a script called "presurfer". This presurfered scan
should work with recon-all (and it indeed works for my colleagues). However, I
have systematically an error when I try to run recon-all on those files.
The error says:
"talairach_avi log file is transforms/talairach_avi.log...
Error:mpr2mni305 failed, see transforms/talairach_avi.log
Command exited with non-zero status 1".
I attached you the talairach_avi.log and the recon_all.log files.
1. Freesurfer version:
freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460
2. Platform: Unbuntu 22.04
3. Recon-all.log: attached
Best wishes,
Eva Hensenne
/home/eva/freesurfer/subjects/210_1/mri
/home/eva/freesurfer/bin/talairach_avi
--i orig_nu.mgz --xfm transforms/talairach.auto.xfm
talairach_avi 7.4.1
Linux eva-VirtualBox 6.2.0-34-generic #34~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Thu Sep 7 13:12:03 UTC 2 x86_64 x86_64 x86_64 GNU/Linux
wo 18 okt 2023 14:18:24 CEST
mri_convert orig_nu.mgz talsrcimg.img
reading from orig_nu.mgz...
TR=4500.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
writing to talsrcimg.img...
Analyze Output Matrix
-1.00000 0.00000 0.00000 130.65704;
0.00000 0.00000 1.00000 -100.44733;
0.00000 -1.00000 0.00000 99.46347;
0.00000 0.00000 0.00000 1.00000;
--------------------
INFO: set hdr.hist.orient to -1
mpr2mni305 talsrcimg
wo 18 okt 2023 14:18:26 CEST
/home/eva/freesurfer/bin/mpr2mni305 talsrcimg
mpr2mni305 7.4.1
target=711-2C_as_mni_average_305
---------------------------------------------------------------------
analyzeto4dfp talsrcimg -O0 -y
---------------------------------------------------------------------
freesurfer ifh2hdr.c
Wed Oct 18 14:18:27 2023
Writing: talsrcimg.4dfp.hdr
freesurfer analyzeto4dfp.c
Reading: talsrcimg.hdr
header size 348 bytes
hdr.dime.datatype offset=70 value=2
hdr.dime.bitpix offset=72 value=8
hdr.hist.orient offset=252 value=-1
dimensionality 4
dimensions 256 256 256 1
Reading: talsrcimg.img
Writing: talsrcimg.4dfp.img
Writing: talsrcimg.4dfp.ifh
ifh2hdr talsrcimg -r0to255
ori=2
---------------------------------------------------------------------
gauss_4dfp talsrcimg 1.1
---------------------------------------------------------------------
gauss_4dfp: error while loading shared libraries: libquadmath.so.0: cannot open shared object file: No such file or directory
ERROR: 'gauss_4dfp talsrcimg 1.1' failed! status=127
ERROR: mpr2mni305 execution aborted
wo 18 okt 2023 14:12:47 CEST
cd /home/eva/freesurfer/subjects/210_1
setenv SUBJECTS_DIR /home/eva/freesurfer/subjects
/home/eva/freesurfer/bin/recon-all -i /home/eva/Riluzole/Riluzole_data/RIL_210/Meting_1/presurfer/210_1_UNI_MP2RAGEised_stripped.nii.gz -subject 210_1 -all
subjid 210_1
setenv SUBJECTS_DIR /home/eva/freesurfer/subjects
FREESURFER_HOME /home/eva/freesurfer
Actual FREESURFER_HOME /home/eva/freesurfer
build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460
Linux eva-VirtualBox 6.2.0-34-generic #34~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Thu Sep 7 13:12:03 UTC 2 x86_64 x86_64 x86_64 GNU/Linux
cputime unlimited
filesize unlimited
datasize unlimited
stacksize 8192 kbytes
coredumpsize 0 kbytes
memoryuse unlimited
vmemoryuse unlimited
descriptors 1024
memorylocked 500176 kbytes
maxproc 15332
maxlocks unlimited
maxsignal 15332
maxmessage 819200
maxnice 0
maxrtprio 0
maxrttime unlimited
total used free shared buff/cache available
Mem: 3,8Gi 1,4Gi 431Mi 52Mi 2,0Gi 2,0Gi
Swap: 3,8Gi 16Mi 3,8Gi
########################################
program versions used
7.4.1 (freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460)
7.4.1
ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:47-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:47-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:47-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:47-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
mri_convert -all-info
ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
7.4.1
ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
7.4.1
ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:48-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
mri_motion_correct.fsl 7.4.1
mri_convert -all-info
ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/10/18-12:12:49-GMT BuildTime: Jun 14 2023 03:45:01 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 User: eva Machine: eva-VirtualBox Platform: Linux PlatformVersion: 6.2.0-34-generic CompilerName: GCC CompilerVersion: 8.4.0
Program nu_correct, built from:
Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
#######################################
GCADIR /home/eva/freesurfer/average
GCA RB_all_2020-01-02.gca
GCASkull RB_all_withskull_2020_01_02.gca
AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif
GCSDIR /home/eva/freesurfer/average
GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs
#######################################
/home/eva/freesurfer/subjects/210_1
mri_convert /home/eva/Riluzole/Riluzole_data/RIL_210/Meting_1/presurfer/210_1_UNI_MP2RAGEised_stripped.nii.gz /home/eva/freesurfer/subjects/210_1/mri/orig/001.mgz
mri_convert /home/eva/Riluzole/Riluzole_data/RIL_210/Meting_1/presurfer/210_1_UNI_MP2RAGEised_stripped.nii.gz /home/eva/freesurfer/subjects/210_1/mri/orig/001.mgz
reading from /home/eva/Riluzole/Riluzole_data/RIL_210/Meting_1/presurfer/210_1_UNI_MP2RAGEised_stripped.nii.gz...
TR=4500.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (1, 0, 0)
j_ras = (0, 1, 0)
k_ras = (0, 0, 1)
writing to /home/eva/freesurfer/subjects/210_1/mri/orig/001.mgz...
@#@FSTIME 2023:10:18:14:12:49 mri_convert N 2 e 3.06 S 2.49 U 0.48 P 97% M 56576 F 8 R 12763 W 0 c 14 w 6 I 7048 O 6552 L 74 0 37
@#@FSLOADPOST 2023:10:18:14:12:53 mri_convert N 2 74 0 37
#--------------------------------------------
#@# MotionCor wo 18 okt 2023 14:12:53 CEST
Found 1 runs
/home/eva/freesurfer/subjects/210_1/mri/orig/001.mgz
Checking for (invalid) multi-frame inputs...
Only one run found so motion
correction will not be performed. I'll
copy the run to rawavg and continue.
cp /home/eva/freesurfer/subjects/210_1/mri/orig/001.mgz /home/eva/freesurfer/subjects/210_1/mri/rawavg.mgz
mri_info /home/eva/freesurfer/subjects/210_1/mri/rawavg.mgz
rawavg.mgz ========================================
Volume information for /home/eva/freesurfer/subjects/210_1/mri/rawavg.mgz
type: MGH
dimensions: 192 x 256 x 256
voxel sizes: 0.900002, 0.898438, 0.898438
type: FLOAT (3)
fov: 230.000
dof: 1
xstart: -86.4, xend: 86.4
ystart: -115.0, yend: 115.0
zstart: -115.0, zend: 115.0
TR: 4500.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees
nframes: 1
PhEncDir: UNKNOWN
FieldStrength: 0.000000
ras xform present
xform info: x_r = 1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 1.6571
: x_a = 0.0000, y_a = 1.0000, z_a = 0.0000, c_a = 28.5527
: x_s = 0.0000, y_s = 0.0000, z_s = 1.0000, c_s = -29.5365
talairach xfm :
Orientation : RAS
Primary Slice Direction: axial
voxel to ras transform:
0.9000 0.0000 0.0000 -84.7431
0.0000 0.8984 0.0000 -86.4473
0.0000 0.0000 0.8984 -144.5365
0.0000 0.0000 0.0000 1.0000
voxel-to-ras determinant 0.726472
ras to voxel transform:
1.1111 0.0000 0.0000 94.1588
0.0000 1.1130 0.0000 96.2197
0.0000 0.0000 1.1130 160.8754
0.0000 0.0000 0.0000 1.0000
/home/eva/freesurfer/subjects/210_1
mri_convert /home/eva/freesurfer/subjects/210_1/mri/rawavg.mgz /home/eva/freesurfer/subjects/210_1/mri/orig.mgz --conform
mri_convert /home/eva/freesurfer/subjects/210_1/mri/rawavg.mgz /home/eva/freesurfer/subjects/210_1/mri/orig.mgz --conform
reading from /home/eva/freesurfer/subjects/210_1/mri/rawavg.mgz...
TR=4500.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (1, 0, 0)
j_ras = (0, 1, 0)
k_ras = (0, 0, 1)
changing data type from float to uchar (noscale = 0)...
MRIchangeType: Building histogram 0 858 1000, flo=0, fhi=0.999, dest_type=0
Reslicing using trilinear interpolation
writing to /home/eva/freesurfer/subjects/210_1/mri/orig.mgz...
@#@FSTIME 2023:10:18:14:12:57 mri_convert N 3 e 5.82 S 2.00 U 3.75 P 98% M 69120 F 0 R 24149 W 0 c 43 w 0 I 0 O 2800 L 75 0 37
@#@FSLOADPOST 2023:10:18:14:13:03 mri_convert N 3 82 0 40
mri_add_xform_to_header -c /home/eva/freesurfer/subjects/210_1/mri/transforms/talairach.xfm /home/eva/freesurfer/subjects/210_1/mri/orig.mgz /home/eva/freesurfer/subjects/210_1/mri/orig.mgz
INFO: extension is mgz
@#@FSTIME 2023:10:18:14:13:03 mri_add_xform_to_header N 4 e 0.83 S 0.58 U 0.21 P 95% M 23168 F 16 R 4553 W 0 c 15 w 15 I 3296 O 2800 L 82 0 40
@#@FSLOADPOST 2023:10:18:14:13:04 mri_add_xform_to_header N 4 82 0 40
mri_info /home/eva/freesurfer/subjects/210_1/mri/orig.mgz
orig.mgz ========================================
Volume information for /home/eva/freesurfer/subjects/210_1/mri/orig.mgz
type: MGH
dimensions: 256 x 256 x 256
voxel sizes: 1.000000, 1.000000, 1.000000
type: UCHAR (0)
fov: 256.000
dof: 1
xstart: -128.0, xend: 128.0
ystart: -128.0, yend: 128.0
zstart: -128.0, zend: 128.0
TR: 4500.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees
nframes: 1
PhEncDir: UNKNOWN
FieldStrength: 0.000000
ras xform present
xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 1.6571
: x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = 28.5527
: x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -29.5365
talairach xfm : /home/eva/freesurfer/subjects/210_1/mri/transforms/talairach.xfm
Orientation : LIA
Primary Slice Direction: coronal
voxel to ras transform:
-1.0000 0.0000 0.0000 129.6571
0.0000 0.0000 1.0000 -99.4473
0.0000 -1.0000 0.0000 98.4635
0.0000 0.0000 0.0000 1.0000
voxel-to-ras determinant -1
ras to voxel transform:
-1.0000 -0.0000 -0.0000 129.6571
-0.0000 -0.0000 -1.0000 98.4635
-0.0000 1.0000 -0.0000 99.4473
-0.0000 -0.0000 -0.0000 1.0000
#--------------------------------------------
#@# Talairach wo 18 okt 2023 14:13:04 CEST
/home/eva/freesurfer/subjects/210_1/mri
mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50
/usr/bin/bc
/home/eva/freesurfer/subjects/210_1/mri
/home/eva/freesurfer/bin/mri_nu_correct.mni
--no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50
nIters 1
mri_nu_correct.mni 7.4.1
Linux eva-VirtualBox 6.2.0-34-generic #34~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Thu Sep 7 13:12:03 UTC 2 x86_64 x86_64 x86_64 GNU/Linux
wo 18 okt 2023 14:13:04 CEST
tmpdir is ./tmp.mri_nu_correct.mni.6164
cd /home/eva/freesurfer/subjects/210_1/mri
AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.6164/nu0.mgz --dtype uchar
AntsN4BiasFieldCorrectionFs done
mri_convert ./tmp.mri_nu_correct.mni.6164/nu0.mgz orig_nu.mgz --like orig.mgz --conform
mri_convert ./tmp.mri_nu_correct.mni.6164/nu0.mgz orig_nu.mgz --like orig.mgz --conform
reading from ./tmp.mri_nu_correct.mni.6164/nu0.mgz...
TR=4500.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: transform src into the like-volume: orig.mgz
writing to orig_nu.mgz...
wo 18 okt 2023 14:18:24 CEST
mri_nu_correct.mni done
@#@FSTIME 2023:10:18:14:13:04 mri_nu_correct.mni N 12 e 319.44 S 19.74 U 294.65 P 98% M 505032 F 32 R 148884 W 0 c 4033 w 124 I 5576 O 5600 L 82 0 40
@#@FSLOADPOST 2023:10:18:14:18:24 mri_nu_correct.mni N 12 45 1 19
talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm
talairach_avi log file is transforms/talairach_avi.log...
ERROR: mpr2mni305 failed, see transforms/talairach_avi.log
Command exited with non-zero status 1
@#@FSTIME 2023:10:18:14:18:24 talairach_avi N 4 e 2.96 S 1.32 U 1.47 P 94% M 83840 F 13 R 28530 W 0 c 104 w 74 I 824 O 163888 L 45 1 19
@#@FSLOADPOST 2023:10:18:14:18:27 talairach_avi N 4 45 1 19
Linux eva-VirtualBox 6.2.0-34-generic #34~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Thu Sep 7 13:12:03 UTC 2 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s 210_1 exited with ERRORS at wo 18 okt 2023 14:18:27 CEST
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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