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Hi Paul,

Thank you for your response. There was an issue with my description. I
meant to refer to volume data. Freeview is displaying a black view, even
though it loads the images. Unfortunately, nothing is visible.

Best,
Mahdi

On Mon, 6 Nov 2023 at 11:30, Wighton, Paul <pwigh...@mgh.harvard.edu> wrote:

> Hi Mahdi,
>
> I'm afraid I don't know what you mean by "Freeview opens fine but when I
> load a column in it just shows a black view."  What is a column in this
> context?
>
> As for registration between PET and MR, have you seen this page?
> https://secure-web.cisco.com/18vNjlLmSGWFTunMb7wArlqA9mQWDmVewpANlk56uM_4t5BjrQ6JC20xM-IfCGjRTVm8JHBTAKDDjGTfWTlR0Tl7pWwpQDTa9iUq5xuXmzq5FhvZYz4CougtZUc0KSwUghDHRf5GSNhe450T_mfdBXXqZEagt2weB4ir46dEC1DQpQ8FV7PEIuiLy1z3HVp3gbjCsii3j4j03rTzmmPs5FUP-VmkbKWIa7_dLCtbBDJidWYD2UEyV7ab5r6eKb0byoeD5Qd53y4Iok2NVwnUXajXd4ZCe1R8wQt8Ndoe2_mSWLSLu8ae6eDQHoXaJeC_iT1Z1F4-j4b4v9uBN0Fdvvw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FPetSurfer
>
> It suggests using mri_coreg.
>
> -Paul
>
> ________________________________________
> From: freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Mahdi Babaei <
> mahdibabai...@gmail.com>
> Sent: Sunday, November 5, 2023 2:25 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: [Freesurfer] Question about Freesurfer
>
>         External Email - Use Caution
>
> Dear FreeSurfer Team,
>
> I'm currently a PhD student at Stevens Institute of Technology in New
> Jersey, USA, where my research focuses on MRI to PET translation. I have a
> number of problems. Freeview opens fine but when I load a column in it just
> shows a black view. Have you ever encountered this problem?
> I'm so confused about using the tool for registration. Can I do
> registration between MRI and PET modalities of the same subject using
> "bbregister"?
>
> Best,
> Mahdi
>
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