External Email - Use Caution        

Currently the tcsh scripts assume a normal Linux .rpm or .deb package 
installation with a dependency on csh/tcsh being installed under /bin.  
  We do not assume spack, modules, etc. as may be used on clusters is 
going to configure software images such that it will conflict with that 
setup.  So the tcsh scripts will not run unless /bin/tcsh exists or maybe 
an alias would work.
If it’s not possible to do a normal install of the .deb or .rpm package to 
directly install all the system command and library dependencies, then I 
recommend analyzing the package files to check all the dependencies are 
otherwise installed.
"If: expression syntax errors" can be from executing the wrong shell.  In 
the case of trying to execute bash scripts, that error might be from running 
something like  “dash” on an Ubuntu flavor of Linux instead of the 
full-blown “bash" shell.
- R

_______________________________________________
Freesurfer mailing list -- freesurfer@nmr.mgh.harvard.edu
To unsubscribe send an email to freesurfer-le...@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman3/lists/freesurfer@nmr.mgh.harvard.edu/
The information in this e-mail is intended only for the person to whom it is 
addressed.  If you believe this e-mail was sent to you in error and the e-mail 
contains patient information, please contact the Mass General Brigham 
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline 
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted).  If you do not wish to 
continue communication over unencrypted e-mail, please notify the sender of 
this message immediately.  Continuing to send or respond to e-mail after 
receiving this message means you understand and accept this risk and wish to 
continue to communicate over unencrypted e-mail. 

Reply via email to