External Email - Use Caution Hi Eugenio,
Thanks for your response. I was more wondering if the standard recon-all pipelines (v8.0) are the same for recon-all clinical, since it seems like recon-all in version 8 uses Synthseg by default. My population is children aged 4-6 years old with cerebral palsy. The T1-weighted scans are MPRAGE, 0.8mm isotropic. Thanks, Stefanie ________________________________ From: Iglesias Gonzalez, Juan E. <jiglesiasgonza...@mgh.harvard.edu> Sent: Tuesday, July 1, 2025 8:35 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Re: Recon-all clinical vs. FS version 8.0.0 Dear Stefanie, What type of pathology are we discussing? What ages? What MRI sequence and resolution? Cheers, /Eugenio -- Juan Eugenio Iglesias http://secure-web.cisco.com/1PKkxbC9l1cTSOMFLvq2CIc1G3lbc9HKvpV6RrW9US8omrp44qcDFfHzQ5yveI66RLJirwHnedrug55mATKHmnmydaKb4jslDEcCl1IkrF8fKxK4NIylOFUZJYwWWtCmNCnt42S9OIbaDg-zS3R2vuuTjKCRdLqoIGfquGwipSBiD1w-i5qIqh05Kg7H9LhGTZFEqXiv4_DVMYbE0Vh6aqdYuAv7Mm-nvsh9W1-V4gtD_eMxhOZARQRyYu3PLTFI3S8j0AZIUKb5PtEjAkgCX6ax71YHJ7jj_ZWsoeIjEUVORdD-s_Ob-kh2TFewZFpTI/http%3A%2F%2Fwww.jeiglesias.com From: Stefanie Bradley <stefanie.brad...@mail.utoronto.ca> Date: Tuesday, July 1, 2025 at 5:49 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Recon-all clinical vs. FS version 8.0.0 External Email - Use Caution Hi there, I am analyzing some pediatric brains with clinical pathology, and I was wondering if I would expect a difference in the reconstructions from regular recon-all (Freesurfer version 8.0.0) vs. recon-all clinical, since they both use SynthSeg from what I understand? Thanks, Stefanie
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