Steve, 

Some little comments in blue. 

Nicholas S. Thompson
Emeritus Professor of Psychology and Ethology, 
Clark University ([email protected])
http://home.earthlink.net/~nickthompson/naturaldesigns/




----- Original Message ----- 
From: Steve Smith 
To: The Friday Morning Applied Complexity Coffee Group
Sent: 6/21/2009 5:37:03 PM 
Subject: Re: [FRIAM] Was human nature, now EvoDevo


Nick

Sorry.  Misspoke.  Don't really make a distinction between human nature and the 
human condition.  Each is a creation of the other.  they are dialectically 
intertwined.... or whatever.  So, you cant disagree with me on that point any 
more.
Ah, but it is Human Nature *and* the Human Condition to disagree (for fun and 
profit). 

So, let's take this occasion to transition to a different topic ... 
development. 

Embryological models then...?

And I have to say, I still don't quite "get it"  But I think I am beginning to 
understand why ... the metaphors they use are bad.  Nobody has come up with a 
good metaphor to come up with how we now know development to work.  
Metaphors are like (to use a Simile) using piecewise linear (or more apt for 
several reasons, piecewise sigmoids) curves to fit an arbitrary 1-D Function.   
Each piece can be pretty good "locally" but begin with, but to stretch the 
application to far leads to disaster... thus the "piecewise".  Depending on the 
specific parameters of your linear (or sigmoidal) fit, there are regions where 
more than one parametric model (or metaphorical target domain) fit equally well 
and it only matters which one you choose if you know which direction you are 
headed away from the region of interest.

How do we get pluris e uno?

nst --> I think the "e" means "from" "many from one" 
Eh?   All are One?   One are One?  We are all one?  All one vs Alone?   
The stunning discovery of the last 25 years is how widely and in what detail 
sequences of genes are similar among animals of widely different form.  The 
metaphor they use is of a genetic tool kit.  Even tho organisms have many 
different genes, they all share an essential toolkit.  Carroll actually depicts 
a little toolbox with cubbies  in for the "tools".  The DNA sequences in this 
basic, shared tool kit are often similar down to the last base.  So even though 
planaria, bees, octopi, and humans have wildly different eyes, the making of 
eyes in all of these species is dependent upon a shared sequence of genes that 
generate a shared bunch of proteins. 

Actually I believe that eyes are the favorite example of multiple, parallel 
(and sometimes convergent) evolution.   That is not to say that they don't 
share some of the same basic proteins, but that their higher level structure 
(and coding) was (apparently) arrived at independently. 

nst -->  I think Carroll would disagree with you.  It's the highest level of 
coding that seemst to be widely shared.  The Hox proteins and their like. 

 I think this might be more like noticing that many "stone age" cultures use 
"stone", "plant materials", and "animal products" for the basis of their 
technology.   The fact that around the world that many different cultures 
*knapped* stone and then lashed it onto sticks to make spears and arrows and 
then made atlatls and bows to hurl these missiles, seems more like the 
situation of re-invention/discovery of eyeballness across many genera.

... 
what would be  GOOD metaphor to encapsulate this process?  Remember, we have 
stipulated here repeatedly that all metaphors are faulted and that a GOOD 
metaphor is one whose faults do not encourage defunct notions of what is going 
on.  So, for instance, in matters of development, a GOOD metaphor should 
scrupulously avoid any implication of intelligence in its description of what 
these "organizing" proteins are doing. 


So... I've already used my simile of "piecewise curve fitting" to describe how 
(inherently multidimensional) metaphors work to model the "real" world in our 
language.   I believe that a GOOD metaphor has more properties than just having 
a "good fit" in the dimensions and range of a system/phenomena/concept we are 
modeling.   A minimally sufficient metaphor would have that.   And if it *also* 
yielded a *bad fit* in one or more dimensions (especially those which we hold 
high weight on) such as you describe here with the "toolkit metaphor" 
immediately calling forth the need of a "toolwielder".   So GOOD metaphor 
"fits" the phenomena well (within a relevant and desired subset of it's 
dimensions and range) without yielding "false positive" matches in the source 
domain ( such as the "tool wielder" example).  A GREAT metaphor has some other 
properties, such as being inherently parameterizeable.... such as if the 
"toolkit" had tools which could be more or less self-motivated/articulated and 
in invoking the metaphor, one could appeal to the more rather than less 
motivated/articulated nature.  Another property is that the metaphor can be 
deliberately "twisted" or "broken" to yield interesting variations.   I suspect 
the "toolkit metaphor" *does* get broken/twisted to fit, but not very 
gracefully it would seem.  Some metaphors seem more amenable to (deliberate and 
thoughtful) distortion than others.  Similarly, *mixing* metaphors can be very 
useful... blending between two.

nst -->  Steve, I would really like to sit down and study this text with you.  
I have been reading on all day, and the metaphoric stew gets lumpier and 
lumpier with each passing paragraph.  I read one paragraph with 8 different 
metaphors in it, all more or less inconsistent.  


Does any one have a better metaphor?
My training (or lack of imagination) leaves me thinking of gene expression and 
regulation in cybernetic terms... feedback loops, etc.   This is not new, so 
probably not useful to you in this case.

nst --> Well, not so fast!  I think metaphors from control systems are natural 
here.  The more carrol writes, also, the more parallels I see between a gene 
and a motor neuron.  


If any of you are wondering why I am so verbose and wondering, further, when it 
will stop, try sending some decent weather to Massachusetts.  
Eleventh straight day of rain.  
FWIW, I am enjoying your verbosity... and we've been having our own spate of 
wet weather here in NM... very nice for this time of year...

- Steve
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