> > I've successfully installed bx-python, and there are mountain of utility > scripts. Which ones do you use for converting the quals.fa file to binned > array format? >
bx-python/scripts/qv_to_bqv.py On Feb 1, 2011, at 2:50 PM, Guru Ananda wrote: > > Hi David, > > We download quality score files (qual.fa) from UCSC and convert them to > binned array format using scripts from bx-python ( > https://bitbucket.org/james_taylor/bx-python/wiki/Home) to enable fast > seek. > If you interested in the particulars (which script etc.), please let me > know and I can provide you with the details. > > Thanks, > Guru. > > On Tue, Feb 1, 2011 at 1:23 PM, David Hoover <hoove...@helix.nih.gov>wrote: > >> Where do the files in quality_scores.loc come from? Can they be >> downloaded from UCSC or somewhere else? >> >> David Hoover >> Helix Systems Staff >> http://helix.nih.gov >> _______________________________________________ >> galaxy-dev mailing list >> galaxy-dev@lists.bx.psu.edu >> http://lists.bx.psu.edu/listinfo/galaxy-dev >> > > > > -- > Graduate student, Bioinformatics and Genomics > Makova lab/Galaxy team > 505 Wartik lab > University Park PA 16802 > g...@psu.edu > > > -- Graduate student, Bioinformatics and Genomics Makova lab/Galaxy team 505 Wartik lab University Park PA 16802 g...@psu.edu
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