Nate Coraor wrote:
> > $ uname -v
> > #1 SMP Tue Jul 22 18:01:05 EDT 2008
> > $ uname -r
> > 2.6.9-78.0.1.ELsmp
RHEL 4, I believe?
> > $ cd galaxy-dist
> > $ sh run.sh
> > <...lots of lines here...>
> > Fetch successful.
> > <...more lines here...>
> > ysam/csamtools.py", line 6, in __bootstrap__
> > ImportError:
> > /home/tsakai/.python-eggs/pysam-0.1.1_kanwei_90e03180969d-py2.5-linux-x86_64-ucs2.egg-tmp/pysam/csamtools.so:
> > undefined symbol: deflateSetHeader
> > $ echo $?
> > 1
> > So, I am lost now. Can somebody please give me a tip as to how to proceed?
> I'll dig in to this last bit and get back to you ASAP.
It would appear that your zlib does not contain deflateSetHeader, which
was added to zlib in version 188.8.131.52, released in 2004. RHEL 4.X
apparently ships with zlib 184.108.40.206. If you have a newer zlib installed
somewhere, you can work around this problem by setting $LD_LIBRARY_PATH
to point to the directory with the newer libz.so.1. LD_LIBRARY_PATH is
a hack so this is not ideal, but you may not want to override libz
globally by changing something like /etc/ld.so.conf.
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