Jason, Thanks for pointing this error out - it's now fixed in galaxy-central and appears to be working on test.
This fix will be on main after the next scheduled update. On Sun, May 15, 2011 at 8:43 PM, Ellul Jason <jason.el...@petermac.org> wrote: > > Hi All, > > I am installing and testing galaxy-dist locally and I have installed all the > rgenetics tools and have them working but there seems to be a one problem. > > If I upload a lped file, then edit the attributes and convert it to a plink > pbed file the tools such as QC reports and Case Control will work. > If however I select "(as pbed) RgeneticsData" to run the tool directly I > receive the following error: > > input data 1 is in error state > I don't think this error is strictly related to rgenetics but something goes > wrong after tools/parameters/basic.py gets called. > > Thanks for producing a fantastic resource and I would appreciate any help, > -- > > Jason Ellul > Bioinformatician > Cancer Research Division > > Peter MacCallum Cancer Centre > TEL: +61 3 9656 1512 > FAX: +61 3 9656 1411 > EMAIL: jason.el...@petermac.org > > Address: St Andrew's Place East Melbourne Victoria 3002 Australia > Postal Address: Locked Bag No. 1 A'Beckett St., Victoria, 8006, Australia > > This email (including any attachments or links) may contain > confidential and/or legally privileged information and is > intended only to be read or used by the addressee. If you > are not the intended addressee, any use, distribution, > disclosure or copying of this email is strictly > prohibited. > Confidentiality and legal privilege attached to this email > (including any attachments) are not waived or lost by > reason of its mistaken delivery to you. > If you have received this email in error, please delete it > and notify us immediately by telephone or email. Peter > MacCallum Cancer Centre provides no guarantee that this > transmission is free of virus or that it has not been > intercepted or altered and will not be liable for any delay > in its receipt. > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ -- Ross Lazarus MBBS MPH; Associate Professor, Harvard Medical School; Director of Bioinformatics, Channing Lab; Tel: +1 617 505 4850; Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444; ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
