On Tue, May 17, 2011 at 5:30 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > Hi all, > > I'm wondering if the following task can be done in Galaxy with the > standard tools. The specific example is selecting the top (e.g. 3) > match sequences for each blast query, but I see this problem as much > more general than a "Select top BLAST hits" tool. > > ... > > Does this make sense? Does it seem like a useful tool to write if > there isn't anything like this already present? Or might it be simpler > to just write a "Select top BLAST hits" tool?
While I still think the above task could be useful in general, I am now considering a general "BLAST filter" tool to offer this and some other commonly used filters like a minimum coverage threshold (which is possible with a filter on the extended tabular output, but not trivial). Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
