Hi Leandro
I do not think the binding is env var aware. I used the following string
in Galaxy drmaa configuration in universe_wsgi.ini
default_cluster_job_runner = drmaa://-q srpipeline -P pipeline/
-q for the queue and -P for the project
Marina
On 19/05/2011 12:54, Leandro Hermida wrote:
Hi Marina,
Thank you so much for your help, LSF DRMAA is working fine with Galaxy
now.
One final problem though... if I specify the env var LSB_DEFAULTQUEUE
to a specific queue the Galaxy server appears in the log to submit the
job but it doesn't ever seem to get executed and looking in LSF with
bjobs -u all we don't see any galaxy submitted jobs, strange. Is
there something I am not setting up right with the particular queue?
best,
Leandro
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