Hi Leandro

I do not think the binding is env var aware. I used the following string in Galaxy drmaa configuration in universe_wsgi.ini


default_cluster_job_runner = drmaa://-q srpipeline -P pipeline/

-q for the queue and -P for the project

Marina


On 19/05/2011 12:54, Leandro Hermida wrote:
Hi Marina,

Thank you so much for your help, LSF DRMAA is working fine with Galaxy now.

One final problem though... if I specify the env var LSB_DEFAULTQUEUE to a specific queue the Galaxy server appears in the log to submit the job but it doesn't ever seem to get executed and looking in LSF with bjobs -u all we don't see any galaxy submitted jobs, strange. Is there something I am not setting up right with the particular queue?

best,
Leandro




--
The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to