Thanks Marina this works perfectly, everything fully operational now very glad for your help!
-Leandro On Thu, May 19, 2011 at 2:23 PM, Marina Gourtovaia <m...@sanger.ac.uk> wrote: > Hi Leandro > > I do not think the binding is env var aware. I used the following string in > Galaxy drmaa configuration in universe_wsgi.ini > > default_cluster_job_runner = drmaa://-q srpipeline -P pipeline/ > > -q for the queue and -P for the project > > Marina > > > > On 19/05/2011 12:54, Leandro Hermida wrote: > > Hi Marina, > > Thank you so much for your help, LSF DRMAA is working fine with Galaxy now. > > One final problem though... if I specify the env var LSB_DEFAULTQUEUE to a > specific queue the Galaxy server appears in the log to submit the job but it > doesn't ever seem to get executed and looking in LSF with bjobs -u all we > don't see any galaxy submitted jobs, strange. Is there something I am not > setting up right with the particular queue? > > best, > Leandro > > > -- The Wellcome Trust Sanger Institute is operated by Genome Research > Limited, a charity registered in England with number 1021457 and a company > registered in England with number 2742969, whose registered office is 215 > Euston Road, London, NW1 2BE. >
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