Hello everybody,
currently I have some trouble with the following kind of error:
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position
155: ordinal not in range(128)
We have encountered it twice now. The first time it was related to a
shared library, which could not be opened anymore because of this error.
So we deleted the library and set it up again.
The second time it was related to a workflow. Clicking on "Run" caused
this error to appear, while editing still worked. This time I saved the
error message and you can find it attached to this mail. The cause of
the error was a < sign in a renaming step inside the workflow (the < was
part of the new name). After removing the < everything worked again.
However, when using the < in a history item, it works without a problem.
Unfortunately I cannot reproduce the error currently on my machine. The
computer that caused it was a Mac.
Should we just try to avoid any special characters or is this actually a
bug which could be fixed?
Best regards,
Sarah
10.1.4.162 - - [09/Jun/2011:10:56:28 +0200] "GET
/workflow/run?id=91cc5a0bc3008f7d HTTP/1.1" 500 -
"http://solweb2/workflow/list_for_run"; "Mozilla/5.0 (Macintosh; U; Intel Mac OS
X 10.6; en-US; rv:1.9.2.16) Gecko/20110319 Firefox/3.6.16"
Error - <type 'exceptions.UnicodeDecodeError'>: 'ascii' codec can't decode byte
0xe2 in position 155: ordinal not in range(128)
URL: http://solweb2/workflow/run?id=91cc5a0bc3008f7d
File
'/galaxy/galaxy_server/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py',
line 143 in __call__
app_iter = self.application(environ, start_response)
File '/galaxy/galaxy_server/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line
80 in __call__
return self.application(environ, start_response)
File '/galaxy/galaxy_server/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py',
line 632 in __call__
return self.application(environ, start_response)
File '/galaxy/galaxy_server/lib/galaxy/web/framework/base.py', line 145 in
__call__
body = method( trans, **kwargs )
File '/galaxy/galaxy_server/lib/galaxy/web/controllers/workflow.py', line 1397
in run
incoming=kwargs )
File '/galaxy/galaxy_server/lib/galaxy/web/framework/__init__.py', line 650 in
fill_template
return self.fill_template_mako( filename, **kwargs )
File '/galaxy/galaxy_server/lib/galaxy/web/framework/__init__.py', line 661 in
fill_template_mako
return template.render( **data )
File '/galaxy/galaxy_server/eggs/Mako-0.2.5-py2.6.egg/mako/template.py', line
133 in render
return runtime._render(self, self.callable_, args, data)
File '/galaxy/galaxy_server/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line
364 in _render
_render_context(template, callable_, context, *args,
**_kwargs_for_callable(callable_, data))
File '/galaxy/galaxy_server/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line
381 in _render_context
_exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
File '/galaxy/galaxy_server/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line
414 in _exec_template
callable_(context, *args, **kwargs)
File '/galaxy/galaxy_server/database/compiled_templates/base.mako.py', line 40
in render_body
__M_writer(unicode(next.body()))
File '/galaxy/galaxy_server/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line
255 in <lambda>
return lambda *args, **kwargs:callable_(self.context, *args, **kwargs)
File '/galaxy/galaxy_server/database/compiled_templates/workflow/run.mako.py',
line 226 in render_body
__M_writer(unicode(do_inputs( module.get_runtime_inputs(type_filter),
step.state.inputs, errors.get( step.id, dict() ), "", step )))
File '/galaxy/galaxy_server/database/compiled_templates/workflow/run.mako.py',
line 39 in do_inputs
return
render_do_inputs(context.locals_(__M_locals),inputs,values,errors,prefix,step,other_values)
File '/galaxy/galaxy_server/database/compiled_templates/workflow/run.mako.py',
line 391 in render_do_inputs
__M_writer(unicode(row_for_param( input, values[ input.name ], other_values,
errors, prefix, step )))
File '/galaxy/galaxy_server/database/compiled_templates/workflow/run.mako.py',
line 297 in row_for_param
return
render_row_for_param(context,param,value,other_values,error_dict,prefix,step)
File '/galaxy/galaxy_server/database/compiled_templates/workflow/run.mako.py',
line 466 in render_row_for_param
__M_writer(unicode(param.get_html_field( t, value, other_values ).get_html(
str(step.id) + "|" + prefix )))
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 155:
ordinal not in range(128)
CGI Variables
-------------
CONTENT_LENGTH: '0'
HTTP_ACCEPT: 'text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8'
HTTP_ACCEPT_CHARSET: 'ISO-8859-1,utf-8;q=0.7,*;q=0.7'
HTTP_ACCEPT_ENCODING: 'gzip,deflate'
HTTP_ACCEPT_LANGUAGE: 'en-us,en;q=0.5'
HTTP_CONNECTION: 'Keep-Alive'
HTTP_COOKIE:
'galaxysession=f611411aa8a0c6655dce25cc8ce7931696473135a41884694eefb704cf34d98429880ec7e01926f8'
HTTP_HOST: 'solweb2'
HTTP_REFERER: 'http://solweb2/workflow/list_for_run'
HTTP_USER_AGENT: 'Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.6; en-US;
rv:1.9.2.16) Gecko/20110319 Firefox/3.6.16'
HTTP_X_FORWARDED_FOR: '10.1.4.162'
HTTP_X_FORWARDED_HOST: 'solweb2'
HTTP_X_FORWARDED_SERVER: 'solweb2'
ORGINAL_HTTP_HOST: 'localhost:8080'
ORGINAL_REMOTE_ADDR: '127.0.0.1'
PATH_INFO: '/workflow/run'
QUERY_STRING: 'id=91cc5a0bc3008f7d'
REMOTE_ADDR: '10.1.4.162'
REQUEST_METHOD: 'GET'
SERVER_NAME: '0.0.0.0'
SERVER_PORT: '8080'
SERVER_PROTOCOL: 'HTTP/1.1'
Configuration
-------------
__file__: '/galaxy/galaxy_server/universe_wsgi.webapp.ini'
admin_users: 'xxx'
allow_library_path_paste: 'False'
allow_user_creation: 'True'
allow_user_deletion: 'True'
apache_xsendfile: 'True'
bugs_email: 'xxx'
cookie_path: '/'
database_connection: 'postgres://galaxy:galaxy@localhost/galaxy'
database_engine_option_server_side_cursors: 'True'
database_engine_option_strategy: 'threadlocal'
datatypes_config_file: 'datatypes_conf.xml'
debug: 'False'
enable_api: 'True'
enable_job_running: 'False'
enable_pages: 'True'
enable_tracks: 'True'
error_email_to: 'xxx'
external_service_type_config_file: 'external_service_types_conf.xml'
external_service_type_path: 'external_service_types'
file_path: 'database/files'
fulltext_max_size: '200'
fulltext_noindex_filetypes:
'bam,sam,wig,bigwig,fasta,fastq,fastqsolexa,fastqillumina,fastqsanger'
gbrowse_display_sites:
'wormbase,tair,modencode_worm,modencode_fly,local_mouse,local_human,local_fly'
genetrack_display_sites: 'main,test'
here: '/galaxy/galaxy_server'
id_secret: 'xxx'
job_working_directory: 'database/job_working_directory'
len_file_path: 'tool-data/shared/ucsc/chrom'
library_import_dir: '/galaxy/galaxy_server/data'
log_actions: 'True'
log_events: 'True'
log_level: 'DEBUG'
new_file_path: 'database/tmp'
new_user_dataset_access_role_default_private: 'False'
nglims_config_file: 'tool-data/nglims.yaml'
require_login: 'False'
set_metadata_externally: 'True'
smtp_server: 'xxx'
static_cache_time: '360'
static_dir: '/galaxy/galaxy_server/static/'
static_enabled: 'True'
static_favicon_dir: '/galaxy/galaxy_server/static/favicon.ico'
static_images_dir: '/galaxy/galaxy_server/static/images'
static_scripts_dir: '/galaxy/galaxy_server/static/scripts/'
static_style_dir: '/galaxy/galaxy_server/static/june_2007_style/blue'
tool_config_file: 'tool_conf.xml'
tool_data_path: 'tool-data'
tool_path: 'tools'
ucsc_display_sites: 'main,archaea,ucla'
upstream_gzip: 'False'
use_interactive: 'False'
use_lint: 'False'
use_nglims: 'False'
use_profile: 'False'
wiki_url: 'http://bitbucket.org/galaxy/galaxy-central/wiki'
WSGI Variables
--------------
application: <paste.recursive.RecursiveMiddleware object at 0x5871850>
paste.cookies: (<SimpleCookie:
galaxysession='f611411aa8a0c6655dce25cc8ce7931696473135a41884694eefb704cf34d98429880ec7e01926f8'>,
'galaxysession=f611411aa8a0c6655dce25cc8ce7931696473135a41884694eefb704cf34d98429880ec7e01926f8')
paste.expected_exceptions: [<class 'paste.httpexceptions.HTTPException'>]
paste.httpexceptions: <paste.httpexceptions.HTTPExceptionHandler object at
0x3483f10>
paste.httpserver.thread_pool: <paste.httpserver.ThreadPool object at 0xd03c50>
paste.parsed_querystring: ([('id', '91cc5a0bc3008f7d')],
'id=91cc5a0bc3008f7d')
paste.recursive.forward: <paste.recursive.Forwarder from />
paste.recursive.include: <paste.recursive.Includer from />
paste.recursive.include_app_iter: <paste.recursive.IncluderAppIter from />
paste.recursive.script_name: ''
paste.throw_errors: True
webob._parsed_query_vars: (MultiDict([('id', '91cc5a0bc3008f7d')]),
'id=91cc5a0bc3008f7d')
wsgi process: 'Multithreaded'
------------------------------------------------------------
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