Hi, with the new ToolShed inplace, and support for cloning/pulling tools directly: What's the recommend way to organize the repositories ?
For example, I want to use Peter's Venn tool: hg clone http://toolshed.g2.bx.psu.edu/repos/peterjc/venn_list If I clone, I get the following folder hierarchy: venn_list -> tools -> plotting -> xml/py . So I can't directly clone into the <galaxy>/tools folder. Even if I could (somehow skipping the "venn_list" directory), cloning multiple tools would override the ".hg" folder of each other. so is it still a manual process of cloning to a temporary directory, then manually copy the files to the <galaxy>/tools folder ? or am I missing something ? being able to automagically "pull -u" tools from the toolshed would be really cool. thanks, -gordon ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/