Hi,
I launched a big job on my local galaxy server (for which I am admin). The job
was to put local dir in the datalist.
It took too long and i wanted to stop it .... but how?? i failed to find a
solution.
To stop the job i thought that stopping the galaxy running instance could make
it. (AM I RIGHT?)
Unfortunately, i failed to restart galaxy. I have the following error:
galaxy.web.framework.base DEBUG 2011-06-28 14:51:49,031 Enabling 'tracks'
controller, class: TracksController
galaxy.web.buildapp DEBUG 2011-06-28 14:51:49,046 Enabling 'httpexceptions'
middleware
galaxy.web.buildapp DEBUG 2011-06-28 14:51:49,047 Enabling 'recursive'
middleware
galaxy.web.buildapp DEBUG 2011-06-28 14:51:49,048 Enabling 'print debug'
middleware
galaxy.web.buildapp DEBUG 2011-06-28 14:51:49,104 Enabling 'eval exceptions'
middleware
galaxy.web.buildapp DEBUG 2011-06-28 14:51:49,104 Enabling 'trans logger'
middleware
galaxy.web.buildapp DEBUG 2011-06-28 14:51:49,104 Enabling 'config' middleware
galaxy.web.buildapp DEBUG 2011-06-28 14:51:49,104 Enabling 'x-forwarded-host'
middleware
Starting server in PID 12394.
Traceback (most recent call last):
File "./scripts/paster.py", line 34, in ?
command.run()
File
"/opt/galaxy-central/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/command.py",
line 84, in run
invoke(command, command_name, options, args[1:])
File
"/opt/galaxy-central/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/command.py",
line 123, in invoke
exit_code = runner.run(args)
File
"/opt/galaxy-central/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/command.py",
line 218, in run
result = self.command()
File
"/opt/galaxy-central/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/serve.py",
line 303, in command
serve()
File
"/opt/galaxy-central/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/serve.py",
line 287, in serve
server(app)
File
"/opt/galaxy-central/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py",
line 150, in server_wrapper
wsgi_app, context.global_conf,
File
"/opt/galaxy-central/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/util/fixtypeerror.py",
line 57, in fix_call
val = callable(*args, **kw)
File "/opt/galaxy-central/eggs/Paste-1.6-py2.4.egg/paste/httpserver.py", line
1314, in server_runner
serve(wsgi_app, **kwargs)
File "/opt/galaxy-central/eggs/Paste-1.6-py2.4.egg/paste/httpserver.py", line
1264, in serve
threadpool_options=threadpool_options)
File "/opt/galaxy-central/eggs/Paste-1.6-py2.4.egg/paste/httpserver.py", line
1114, in __init__
RequestHandlerClass, ssl_context)
File "/opt/galaxy-central/eggs/Paste-1.6-py2.4.egg/paste/httpserver.py", line
1094, in __init__
RequestHandlerClass, ssl_context)
File "/opt/galaxy-central/eggs/Paste-1.6-py2.4.egg/paste/httpserver.py", line
328, in __init__
HTTPServer.__init__(self, server_address, RequestHandlerClass)
File "/usr/lib64/python2.4/SocketServer.py", line 330, in __init__
self.server_bind()
File "/usr/lib64/python2.4/BaseHTTPServer.py", line 101, in server_bind
SocketServer.TCPServer.server_bind(self)
File "/usr/lib64/python2.4/SocketServer.py", line 341, in server_bind
self.socket.bind(self.server_address)
File "<string>", line 1, in bind
socket.error: (98, 'Address already in use')
galaxy.jobs INFO 2011-06-28 14:51:49,108 sending stop signal to worker thread
galaxy.jobs INFO 2011-06-28 14:51:49,109 job queue stopped
galaxy.jobs.runners.local INFO 2011-06-28 14:51:49,109 sending stop signal to
worker threads
galaxy.jobs.runners.local INFO 2011-06-28 14:51:49,109 local job runner stopped
galaxy.jobs INFO 2011-06-28 14:51:49,109 sending stop signal to worker thread
galaxy.jobs INFO 2011-06-28 14:51:49,109 job stopper stopped
ANY IDEAS to restart galaxy ???
(i have a normal install with no custom stuffs).
thank you
Colin
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