On 06/28/2011 07:06 PM, colin molter wrote:
you are right.
it seems that even if i stopped galaxy
(i just stopped the run.sh command)
i still have a job running:
root 10441 97.0 0.0 77496 1772 pts/6 R 11:59 402:48 python
it seems that the transformation of a fastq file is taking a lot of time (it
uses 100%of cpu since 7hours).
does it sound normal?
I am not very familiar with 'fastq_groomer.py' and without knowing the
size of your fasta file, it is impossible to tell.
Have you tried a subset of your fasta file? May be your data is corrupt
resulting in an endless loop?
i think i have better to kill that job and to try another way.
i stopped the job and it works
2011/6/28 Hans-Rudolf Hotz<h...@fmi.ch>
I launched a big job on my local galaxy server (for which I am admin). The
job was to put local dir in the datalist.
It took too long and i wanted to stop it .... but how?? i failed to find a
go to the admin view -> 'Manage jobs' and there you can kill individual
To stop the job i thought that stopping the galaxy running instance could
make it. (AM I RIGHT?)
possible, but sounds like an 'overkill' to me. I would first try the 'soft'
method described above....and use this only as a last resort.
Unfortunately, i failed to restart galaxy. I have the following error:
are you sure you have killed the galaxy process? Since this part of the
error message tells me that Galaxy (or another service) is still using the
socket.error: (98, 'Address already in use')
How did you stop galaxy?
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