I am, but I would like to be able to change the category. It will be
an RNA-seq tool.
Shaun
Quoting Greg Von Kuster <[email protected]> on Tue, 12 Jul 2011 12:38:08 -0400:
On Jul 12, 2011, at 11:54 AM, SHAUN WEBB wrote:
Thanks Greg, could you delete the repository I created please?
Are you eventually going to use your repository? If you are
planning to never upload a tool, I'll delete it. Otherwise, I'll
leave it active so you can eventually use it.
I guess that step isn't necessary as most people won't create
repositories until they are ready to go. It would stop curious
users like me creating empty repositories by just clicking buttons..
Is there more documentation on what is required to publish a new
tool in the tool shed?
Nothing yet, but as time permits, there will be. It's basically
just common sense. If you have developed a tool that you feel is
useful, upload it. Additional things like including working
functional tests with small input / output datasets makes it even
more useful.
A very important feature that I recently added is baseline
functionality for repository metadata. An attempt is made to
generate repository metadata with each new change set. If the
attempt is not successful, metadata is not generated for that change
set. This metadata will eventually be an important ingredient in
allowing the tool to be automatically installed from the tool shed
into a Galaxy instance with just a few mouse clicks.
Shaun
Quoting Greg Von Kuster <[email protected]> on Tue, 12 Jul 2011
10:24:28 -0400:
Hello Shaun,
On Jul 12, 2011, at 6:07 AM, SHAUN WEBB wrote:
Hi Galaxy team,
I created a new repository on the tool shed called "test", I
wanted to see what steps were required to publish a tool before I
go ahead and release the production version. I then tried to
change the name of the repository and got a server error.
This problem was due to a bug which I've fixed, so the tool shed
is functional with your renamed repository. Thanks for finding
the bug...
When I search for test, try to navigate to 2nd page of the
repository list or view my own repositories the server error
occurs.
Apologies if I broke it...
You didn't , sorry for the bug!
On a side note, I did not see an option to delete a created repository.
Yes, currently only a tool shed admin ( me ) can delete a
repository. I've considered allowing owners to delete
repositories, but that may open up problems with users that want
to be able to download tools from that repository because they
have downloaded them in the past. Obviously this issue affects
the "reproducibility factor". We'll have to figure out how to
handle this optimally...
Also, my test repository went live straight away. Would it make
sense to be able to create a repository and load files then have
a publish button for when you choose to release.
I'm not sure I understand the issue here. Why do you feel that it
is important to have this extra step? Is it just that
repositories should not be displayed until they contain files? if
so, I can probably make that change, and it won't require clicking
a "Publish" button.
Thanks
Shaun
--
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Scotland, with registration number SC005336.
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Greg Von Kuster
Galaxy Development Team
[email protected]
--
The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.
___________________________________________________________
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and other Galaxy lists, please use the interface at:
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Greg Von Kuster
Galaxy Development Team
[email protected]
--
The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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