Hi Ka Ming, Thanks for your answer, but I already checked this for my galaxy user (and for root) on both the galaxy frontend node and on each node all over the cluster. It's the same path as yours for me.
If you have any other idea.... It would be great ! :) Regards, Remy 2011/7/26 Ka Ming Nip <km...@bcgsc.ca> > Hi, > > You may want to check whether your env variables are exported properly. For > example, > > $ env > DRMAA_LIBRARY_PATH=/opt/sge/lib/lx24-amd64/libdrmaa.so.1.0 > > Hope that helps! > > Ka Ming > > ________________________________________ > From: galaxy-dev-boun...@lists.bx.psu.edu [ > galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of remy d1 [ > remy...@gmail.com] > Sent: July 26, 2011 7:44 AM > To: email@example.com > Subject: [galaxy-dev] Invalid job runner: drmaa > > Hi, > > I try to configure Galaxy with SGE. It works one time yesterday but now I > have the following message all the time : > > galaxy.jobs<http://galaxy.jobs> DEBUG 2011-07-26 16:50:54,002 dispatching > job 118 to drmaa runner > galaxy.jobs<http://galaxy.jobs> ERROR 2011-07-26 16:50:54,002 put(): (118) > Invalid job runner: drmaa > > > [ An error occurred running this job: Unable to run job due to a > misconfiguration of the Galaxy job running system. Please contact a site > administrator. ] On the web page. > > Here is my universe_wsgi.ini file : > > > [server:main] > port = 8000 > host = X.X.X.X > use_threadpool = True > [filter:proxy-prefix] > prefix = /galaxy > [app:main] > paste.app_factory = galaxy.web.buildapp:app_factory > filter-with = proxy-prefix > database_connection = mysql://galaxy:xxxxxx@localhost > :3306/galaxy?unix_socket=/var/run/mysqld/mysqld.sock > file_path = database/files > new_file_path = database/tmp > job_working_directory = database/users_space/user_galaxy > cluster_files_directory = database/users_space/user_galaxy > use_nglims = False > nglims_config_file = tool-data/nglims.yaml > static_enabled = True > static_cache_time = 360 > static_dir = %(here)s/static/ > static_images_dir = %(here)s/static/images > static_favicon_dir = %(here)s/static/favicon.ico > static_scripts_dir = %(here)s/static/scripts/ > static_style_dir = %(here)s/static/june_2007_style/blue > log_events = True > log_actions = True > debug = True > use_interactive = True > library_import_dir = /home/galaxy/galaxy-dist/tmpdir > user_library_import_dir = True > allow_library_path_paste = True > admin_users = me@... > enable_pages = True > enable_api = True > set_metadata_externally = True > retry_metadata_internally = True > outputs_to_working_directory = True > start_job_runners = drmaa > default_cluster_job_runner = drmaa:/// > [galaxy:tool_runners] > biomart = local:/// > encode_db1 = local:/// > hbvar = local:/// > microbial_import1 = local:/// > ucsc_table_direct1 = local:/// > ucsc_table_direct_archaea1 = local:/// > ucsc_table_direct_test1 = local:/// > upload1 = local:/// > [galaxy_amqp] > > > I checked many things, but it did not change anything... > > Any help would gracefull. > > Regards. >
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