Hi All, I have moved my database from sqlite to postgresql in my local instance of Galaxy .But I want my old history in new database.How It's possible ?
Regards shashi On Wed, Jul 27, 2011 at 7:19 PM, Peter Cock <p.j.a.c...@googlemail.com>wrote: > On Wed, Jul 27, 2011 at 2:14 PM, shashi shekhar <meshash...@gmail.com> > >>> Hi all, > >>> > >>> I have added separate job runner in my galaxy instance. So far it was > >>> running successfully from many months. > >>> Now its giving error as below and i am unable to trace it. Please > >>> suggest. > >>> > >>> Traceback (most recent call last): > >>> ... > >>> OperationalError: (OperationalError) database is locked None None > >>> > >>> Thanks > >>> Shashi > > > > On Wed, Jul 27, 2011 at 7:00 PM, Peter Cock <p.j.a.c...@googlemail.com> > >> You're not using SQLite as the database are you? I've seen that kind of > >> error message from locking problems (e.g. when the SQLite DB was on > >> a CIFS mapped drive), and it wouldn't surprise me that with a separate > >> thread for the job runner you get contention over the SQLite DB. > >> > >> If you are using PostgreSQL (or MySQL) as recommended for a production > >> Galaxy server, then I'm not sure what could be wrong. > > On Wed, Jul 27, 2011 at 2:42 PM, shashi shekhar <meshash...@gmail.com> > wrote: > > > > I am using sqlite database . > > > > I think that to avoid this database problem you will have to move to > PostgreSQL (which is what the Galaxy team recommend), or possibly > MySQL (not sure what the downsides are). This might be hard if you > already have a number of users and datafiles. > > I've CC'd the list again so hopefully Nate or one of the other Galaxy > Devs can confirm this. > > Peter >
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