On Saturday, July 30, 2011, Shantanu Pavgi <pa...@uab.edu> wrote: > > The -V option is not for verbose mode but for exporting your > shell environment. Refer to qsub manual for details: > "Specifies that all environment variables active within the > qsub utility be exported to the context of the job." > We are already using it in our configuration as needed.
That is such a common need it would be great to have it in the Galaxy documentation as an example of using native SGE options with drmaa:// in universe_wsgi.ini Plus the http://linux.die.net/man/5/sge_complex link. Thanks! > I think we are having problem with the galaxy (or drmaa > Python lib) parsing correct drmaa/SGE messages and > not with the drmaa URL configuration. Thoughts? I'd try adding a few debug log/print statements to the code to try and diagnose it. Peter
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