On Jul 30, 2011, at 4:58 AM, Peter Cock wrote:

> On Saturday, July 30, 2011, Shantanu Pavgi <pa...@uab.edu> wrote:
> >
> > The -V option is not for verbose mode but for exporting your
> > shell environment. Refer to qsub manual for details:  
> > "Specifies  that  all environment variables active within the
> > qsub utility be exported to the context of the job."
> > We are already using it in our configuration as needed.
> That is such a common need it would be great to have
> it in the Galaxy documentation as an example of using
> native SGE options with drmaa:// in universe_wsgi.ini
> Plus the http://linux.die.net/man/5/sge_complex link.
> Thanks!
> > I think we are having problem with the galaxy (or drmaa
> > Python lib) parsing correct drmaa/SGE messages and
> > not with the drmaa URL configuration. Thoughts?
> I'd try adding a few debug log/print statements to the
> code to try and diagnose it.
> Peter

The option is the same for Torque/PBS as well.  We'll have the chance (or 
misfortune depending on how you look at it) of testing both SGE and Torque 


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