Galaxy team,
I am running a locally configured Galaxy instance using Python 2.7. I am getting an error on SAM_to_BAM unable to fetch eggs. When I change back to Python 2.6, the problem is removed and I can run the tool. Is there a quick fix for this problem? Thanks, Kirt -----Original Message----- From: [email protected] [mailto:[email protected]] Sent: Thursday, September 29, 2011 8:07 AM To: Haden, Kirt; Haden, Kirt Subject: Galaxy tool error report from [email protected] GALAXY TOOL ERROR REPORT ------------------------ This error report was sent from the Galaxy instance hosted on the server "ussd-dev-lnx01.illumina.com" ----------------------------------------------------------------------------- This is in reference to dataset id 301 from history id 68 ----------------------------------------------------------------------------- You should be able to view the history containing the related history item 7: SAM-to-BAM on data 6: converted BAM by logging in as a Galaxy admin user to the Galaxy instance referenced above and pointing your browser to the following link. ussd-dev-lnx01.illumina.com/history/view?id=42e99d98e0ee2844 ----------------------------------------------------------------------------- The user '[email protected]' provided the following information: ----------------------------------------------------------------------------- job id: 200 tool id: sam_to_bam ----------------------------------------------------------------------------- job command line: python /home/galaxy/eval/sept09/galaxy-central/tools/samtools/sam_to_bam.py --input1=/home/galaxy/production/Sept06/galaxy-central/database/files/000/dataset_300.dat --dbkey=PhiX --output1=/home/galaxy/production/Sept06/galaxy-central/database/files/000/dataset_301.dat --index_dir=/home/galaxy/eval/sept09/galaxy-central/tool-data ----------------------------------------------------------------------------- job stderr: Traceback (most recent call last): File "/home/galaxy/eval/sept09/galaxy-central/tools/samtools/sam_to_bam.py", line 14, in ? import pkg_resources; pkg_resources.require( "bx-python" ) File "/home/galaxy/eval/sept09/galaxy-central/lib/galaxy/eggs/__init__.py", line 415, in require raise EggNotFetchable( str( [ egg.name for egg in e.eggs ] ) ) galaxy.eggs.EggNotFetchable: ['bx_python'] ----------------------------------------------------------------------------- job stdout: ----------------------------------------------------------------------------- job info: None ----------------------------------------------------------------------------- job traceback: None ----------------------------------------------------------------------------- (This is an automated message).
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