Bossers, Alex wrote:
> Since some time we are observing strange things happening to using files from
> our local data libraries in our local galaxy-central instance:
> The files and hierarchy stay there but when copied to the history..... they
> turn up as being deleted and can only be used by selecting the view_deleted
> and undelete option.
> This didn't happen before. New libraries I make and adding files to it, do
> not show this behaviour.
> We already updated to the latest central version but it did not solve the
> issue. Could it have happened by an earlier update and got unnoticed?
> Has anyone else seen this behaviour on existing data libraries and if so, how
> did you fix it?
> Or some guides in how to debug it ourselves :-P
See line 1925 in lib/galaxy/web/controllers/library_common.py. Try
adding a bit of debugging to find out if hda.deleted == True when the
copied HistoryDatasetAssociation is created, and whether the source
LibraryDatasetDatasetAssociation is itself deleted (which should be the
only way the resulting hda could be deleted).
> Most of these files were linked to be used in galaxy instead of copied. The
> file locations and rights did not change (AFAIK).
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