Reference genomes aren't distributed along with the galaxy source due to size and other factors, but we do have a walkthrough for setting it all up on the wiki at http://wiki.g2.bx.psu.edu/Admin/NGS%20Local%20Setup, see the Setting up References section.
Thanks! Dannon On Oct 25, 2011, at 5:31 PM, Christopher Callaway wrote: > Hi, > > I have Galaxy running locally and when trying to BWA map a set of paired-end > reads, the reference genome does not show up (mm9) by selecting either > History or Built-in. How do I fix this? > > Thanks, > > Christopher W. Callaway > University of Utah > Dept. of Pediatrics > Division of Neonatology > 417 Wakara Way > #2222 > Salt Lake City, UT 84108 > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
