I noted there have been a change on the way GATK tools read
picard_index.loc, from "tool_data_table_conf.xml":
<!-- Location of Picard dict files valid for GATK -->
<table name="gatk_picard_indexes" comment_char="#">
<columns>value, dbkey, name, path, tools_valid_for</columns>
<file path="tool-data/picard_index.loc" />
And I can't decipher how to use column "tools_valid_for". I was able
to show selectable reference genomes in one of the tools by adding its
id there, but I don't know how to add the rest. Should I separate them
by spaces? commas? tabs?, none of these seem to work for me.
Also, what is the best way to identify a tool id, should I just use
file name for its xml file?
Thanks in advance,
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