I noted there have been a change on the way GATK tools read
picard_index.loc, from "tool_data_table_conf.xml":
    <!-- Location of Picard dict files valid for GATK -->
    <table name="gatk_picard_indexes" comment_char="#">
        <columns>value, dbkey, name, path, tools_valid_for</columns>
        <file path="tool-data/picard_index.loc" />

And I can't decipher how to use column "tools_valid_for". I was able
to show selectable reference genomes in one of the tools by adding its
id there, but I don't know how to add the rest. Should I separate them
by spaces? commas? tabs?, none of these seem to work for me.

Also, what is the best way to identify a tool id, should I just use
file name for its xml file?

Thanks in advance,
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:


Reply via email to