Can anyone answer this, please, or point me to the relevant documentation?

On 07/11/2011, Amelia Ireland <airel...@lbl.gov> wrote:
> Apologies in advance for the newbie question.
>
> I have a script that uses various UniProt web services. The script
> sends off a request to the UniProt server, waits for it to be
> returned, and then writes the results to a file. This works fine as a
> standalone script, but when plugged into Galaxy, I get this error:
>
> ⇝ KeyError: 'GALAXY_URL'
> URL: http://127.0.0.1:8080/tool_runner/index
>
> Does Galaxy "intervene" in the operation of all tools that access
> outside web services, and if so, do I need to rewrite the tool as one
> that acts as a data source (like the UCSC browser, biomart, etc.)? The
> data sources documentation did not mention whether this was necessary
> or not.
>
> Thanks!
>
> --
> Amelia Ireland
> Scientific Curator, Gene Ontology project
> http://www.berkeleybop.org || http://www.geneontology.org
> Preventing Euthanasia Through Rescue: http://petrescueinc.org
>


-- 
Amelia Ireland
Scientific Curator, Gene Ontology project
http://www.berkeleybop.org || http://www.geneontology.org
Preventing Euthanasia Through Rescue: http://petrescueinc.org

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