Apologies in advance for the newbie question. I have a script that uses various UniProt web services. The script sends off a request to the UniProt server, waits for it to be returned, and then writes the results to a file. This works fine as a standalone script, but when plugged into Galaxy, I get this error:
⇝ KeyError: 'GALAXY_URL' URL: http://127.0.0.1:8080/tool_runner/index Does Galaxy "intervene" in the operation of all tools that access outside web services, and if so, do I need to rewrite the tool as one that acts as a data source (like the UCSC browser, biomart, etc.)? The data sources documentation did not mention whether this was necessary or not. Thanks! -- Amelia Ireland Scientific Curator, Gene Ontology project http://www.berkeleybop.org || http://www.geneontology.org Preventing Euthanasia Through Rescue: http://petrescueinc.org ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
