I have the software for our SGE cluster (eg. Bowtie) in /mnt/ngswork/galaxy/sw/bin And I've set the PATH environment in the galaxy user's .bashrc
export PATH="/mnt/ngswork/galaxy/sw/bin:$PATH" When I echo $PATH via qsub as galaxy I do see my path in STDIN.o on the job runner node /mnt/ngswork/galaxy/sw/bin:/tmp/41.1.default.q:/usr/local/bin:/bin:/usr/bin But I always see /bin/sh: bowtie: not found As an error message. How can I get the path set correctly? Brad -- Brad Langhorst New England Biolabs [email protected]
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
