Hello Ted,

I assume you cloned your local Galaxy instance from our distribution repo at 
https://bitbucket.org/galaxy/galaxy-dist.

Unfortunately, in order to make use of the features that enable communication 
between your local Galaxy instance and a Galaxy tool shed, you have to update 
your local  Galaxy instance from our Galaxy central repo at 
https://bitbucket.org/galaxy/galaxy-central.  This is because the distribution 
repo is not updated as often as is necessary to keep current with the rapidly 
evolving tool shed code base and feature set.  This issue should be eliminated 
at some point.


On Dec 27, 2011, at 11:54 PM, Ted Goldstein wrote:

> Hello,
> I just installed Galaxy and  am very impressed. But I am having problems 
> adding in tools from the toolshed. When I click on adding a tool such as the 
> Venn Diagram tool, it brings up the following message (even though I never 
> installed it before:
> 
> ============
> Found
> 
> The resource was found at 
> xyzzy.ucsc.edu:1234/admin_toolshed/install_repository?tool_shed_url=http://toolshed.g2.bx.psu.edu&repo_info_dict=9956e395db5a106ba074ae610c525fa17cec3b14:7b2276656e6e5f6c697374223a205b22447261772056656e6e204469616772616d2028504446292066726f6d206c69737473222c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564752f7265706f732f70657465726a632f76656e6e5f6c697374222c2022626166373033316434373065225d7d&includes_tools=True;
>  you should be redirected automatically.
> WSGI Server
> =================
> 
> 
> The page never redirects. As well the URL is malformed (missing the "http:"). 
>  If  I fabricate this by hand. E.g.
> http://xyzzy.ucsc.edu:1234/admin_toolshed/install_repository?tool_shed_url=http://toolshed.g2.bx.psu.edu&repo_info_dict=9956e395db5a106ba074ae610c525fa17cec3b14:7b2276656e6e5f6c697374223a205b22447261772056656e6e204469616772616d2028504446292066726f6d206c69737473222c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564752f7265706f732f70657465726a632f76656e6e5f6c697374222c2022626166373033316434373065225d7d&includes_tools=True
> 
> ============
> Not Found
> 
> The resource could not be found. 
> No route for /admin_toolshed/install_repository
> ============
> The log file shows:
> .2.3.4 - - [27/Dec/2011:20:33:27 -0700] "GET /admin/browse_tool_sheds 
> HTTP/1.1" 200 - "http://xyzzy.ucsc.edu:1234/admin"; "Mozilla/5.0 (Macintosh; 
> U; Intel Mac OS X 10.6; en-US; rv:1.9.2.25) Gecko/20111212 Firefox/3.6.25"
> 1.2.3.4 - - [27/Dec/2011:20:33:30 -0700] "GET 
> /admin/browse_tool_shed?tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F 
> HTTP/1.1" 302 - "http://xyzzy.ucsc.edu:1234/admin/browse_tool_sheds"; 
> "Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.6; en-US; rv:1.9.2.25) 
> Gecko/20111212 Firefox/3.6.25"
> 1.2.3.4 - - [27/Dec/2011:20:44:28 -0700] "GET 
> /admin_toolshed/install_repository?tool_shed_url=http://toolshed.g2.bx.psu.edu&repo_info_dict=9956e395db5a106ba074ae610c525fa17cec3b14:7b2276656e6e5f6c697374223a205b22447261772056656e6e204469616772616d2028504446292066726f6d206c69737473222c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564752f7265706f732f70657465726a632f76656e6e5f6c697374222c2022626166373033316434373065225d7d&includes_tools=True
>  HTTP/1.1" 404 - "-" "Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.6; en-US; 
> rv:1.9.2.25) Gecko/20111212 Firefox/3.6.25"
> 
> ===============
> 
> I looked through the mailing list and wiki and I don't see this problem.  
> Could I have misinstalled or misconfigured something?
> 
> Thanks for the great system!
> 
> Best regards,
> Ted
> 
> 
> Ted Goldstein
> t...@soe.ucsc.edu
> Ph.D. Candidate, HausslerLab, CBSE, UCSC
> (650) 743-4141
> http://soe.ucsc.edu/~ted
> 
> 
> ___________________________________________________________
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Greg Von Kuster
Galaxy Development Team
g...@bx.psu.edu




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