Hi all,

Galaxy has had a tool dependency management system for quite a while now, but 
it was never documented in the past.  I have just written this documentation:


The system does not automatically install anything for you (this is something 
we plan to work on for the Tool Shed that is not yet under way), but explains 
how Galaxy expects to find dependencies and how you can do more advanced things 
than setting $PATH, if doing so would be useful for your environment.

The tool_dependency_dir option is not in the universe_wsgi.ini.sample file in 
the current stable release.  I just added it in the development version 
(galaxy-central), so it'll be part of the next release.  However, the code to 
handle it is part of the stable release (and has been for over a year), so if 
you add it to your config file, the system will behave as described.

Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:


Reply via email to