On Feb 1, 2012, at 12:49 PM, Peter Cock wrote:

> On Wed, Feb 1, 2012 at 5:44 PM, Nate Coraor <n...@bx.psu.edu> wrote:
>> On Feb 1, 2012, at 12:16 PM, Peter Cock wrote:
>>> We've changed some things on the cluster to prepare for this -
>>> e.g. our Galaxy server is now a proper SGE submit host, so
>>> I'm not quite ready to move the production server... still a few
>>> little things to sort out first, e.g.
>>> https://bitbucket.org/galaxy/galaxy-central/issue/713
>> 
>> I suspect that you are going to encounter more problems
>> with the local and cluster mountpoints being different.  Is it
>> not possible to mount it at /data/galaxy on the Galaxy server?
> 
> It is mounted at  /data/galaxy on the Galaxy server, but
> at /mnt/galaxy on the cluster, but I see what you mean.
> The two machines are administered by different people,
> but we can probably find a common mount point if trying
> to do this with symlinks is really not recommended.

Symlinks should be fine, as well.  I would make the Galaxy server's path 
"real", however, and use symlinks on the cluster.

--nate

> 
> Thanks,
> 
> Peter
> 


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