On Feb 2, 2012, at 8:21 AM, Peter Cock wrote: On Thu, Feb 2, 2012 at 1:54 PM, Langhorst, Brad <langho...@neb.com<mailto:langho...@neb.com>> wrote: Peter:
I have a working sge setup. Two ideas: 1 - look in the sge logs on the worker node (on my system they are in /var/spool...) No sign of any SGE logs there - could be system configuration dependent, but thanks. 2 - maybe a permission problem? Maybe. Galaxy *is* collecting the stdout/stderr text, and the files don't exist after job completion, so my hunch is this is a redundant warning in the cleanup code, and the *.drmout and *.drmerr files were already deleted by Galaxy. Peter, I am having similar issue and it started happening only after the recent update. See: http://galaxy-development-list-archive.2308389.n4.nabble.com/job-cleanup-files-drmout-and-drmerr-not-found-td4341867.html I haven't had chance to follow up on my thread yet. But I do think these are redundant warning messages probably getting triggered as file deletion has occurred somewhere before this particular cleanup action. -- Shantanu
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