On Feb 2, 2012, at 8:21 AM, Peter Cock wrote:

On Thu, Feb 2, 2012 at 1:54 PM, Langhorst, Brad 
<langho...@neb.com<mailto:langho...@neb.com>> wrote:

I have a working sge setup.
Two ideas:
1 - look in the sge logs on the worker node (on my system they are in

No sign of any SGE logs there - could be system configuration dependent,
but thanks.

2 - maybe a permission problem?


Galaxy *is* collecting the stdout/stderr text, and the files don't exist
after job completion, so my hunch is this is a redundant warning in
the cleanup code, and the *.drmout and *.drmerr files were already
deleted by Galaxy.


I am having similar issue and it started happening only after the recent 
update. See: 

I haven't had chance to follow up on my thread yet. But I do think these are 
redundant warning messages probably getting triggered as file deletion has 
occurred somewhere before this particular cleanup action.


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