By any chance, do you all happen to be using the nginx upload module?  I am 
guessing not.

--nate

On Feb 23, 2012, at 3:16 AM, Bossers, Alex wrote:

> I confirm the same strange behaviour since some of the last updates on the 
> central version. We are at the latest now. 
> It is also with medium (10Mb+ tarballs) AND large files! Furthermore its 
> seems to be in FireFox only.... They upload fine using IE8 or 9. Didn't test 
> other browsers though.
> 
> Annoying it is indeed.
> 
> Alex
> 
> 
> -----Oorspronkelijk bericht-----
> Van: galaxy-dev-boun...@lists.bx.psu.edu 
> [mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens Jorrit Boekel
> Verzonden: woensdag 22 februari 2012 10:15
> Aan: galaxy-dev@lists.bx.psu.edu
> Onderwerp: [galaxy-dev] uploads stuck in history
> 
> Dear list,
> 
> I have stumbled on some strange behaviour when uploading files to galaxy via 
> the upload.py tool. At times, the upload seems to be stalled in history and 
> is never actually performed, followed by a seemingly infinite history update 
> (see log below). My system is Ubuntu 11.10 and runs Python 2.7.2. I find the 
> behaviour in both my own modified galaxy install (based on galaxy-dist), and 
> in a fresh clone from galaxy-central.
> 
> I have tried to upload different files, and all seem to sometimes trigger the 
> behaviour, but not all the time. A restart of galaxy sometimes sorts things 
> out. Common for the debug messages is that it seems there is never a job id 
> generated as in "galaxy.tools.actions.upload_common INFO 2012-02-22 
> 10:06:36,186 tool
> upload1 created job id 2".
> 
> Has anyone seen similar things or can it be a problem with my system?
> 
> cheers,
> jorrit
> 
> 
> 
> 
> 
> 
> --------------Debug messa:
> 
> galaxy.web.framework DEBUG 2012-02-22 09:47:43,730 Error: this request 
> returned None from get_history(): http://localhost:8080/
> 127.0.0.1 - - [22/Feb/2012:09:47:43 +0200] "GET / HTTP/1.1" 200 - "-" 
> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 
> Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /root/tool_menu HTTP/1.1" 200 
> - "http://localhost:8080/"; "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; 
> rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /history HTTP/1.1" 200 - 
> "http://localhost:8080/"; "Mozilla/5.0 (X11; Ubuntu; Linux x86_64;
> rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "POST /root/user_get_usage 
> HTTP/1.1" 200 - "http://localhost:8080/history"; "Mozilla/5.0 (X11; Ubuntu; 
> Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:47:50 +0200] "GET
> /tool_runner?tool_id=upload1 HTTP/1.1" 200 - 
> "http://localhost:8080/root/tool_menu"; "Mozilla/5.0 (X11; Ubuntu; Linux 
> x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST 
> /tool_runner/upload_async_create HTTP/1.1" 200 - "http://localhost:8080/"; 
> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64;
> rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET 
> /tool_runner/upload_async_message HTTP/1.1" 200 - "http://localhost:8080/"; 
> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64;
> rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /history HTTP/1.1" 200 - 
> "http://localhost:8080/tool_runner/upload_async_message"; "Mozilla/5.0 (X11; 
> Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /root/user_get_usage 
> HTTP/1.1" 200 - "http://localhost:8080/history"; "Mozilla/5.0 (X11; Ubuntu; 
> Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:48:13 +0200] "GET
> /tool_runner?tool_id=upload1 HTTP/1.1" 200 - 
> "http://localhost:8080/root/tool_menu"; "Mozilla/5.0 (X11; Ubuntu; Linux 
> x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:48:15 +0200] "POST /root/history_item_updates 
> HTTP/1.1" 200 - "http://localhost:8080/history"; "Mozilla/5.0 (X11; Ubuntu; 
> Linux x86_64;
> rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:48:19 +0200] "POST /root/history_item_updates 
> HTTP/1.1" 200 - "http://localhost:8080/history"; "Mozilla/5.0 (X11; Ubuntu; 
> Linux x86_64;
> rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:48:23 +0200] "POST /root/history_item_updates 
> HTTP/1.1" 200 - "http://localhost:8080/history"; "Mozilla/5.0 (X11; Ubuntu; 
> Linux x86_64;
> rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:48:27 +0200] "POST /root/history_item_updates 
> HTTP/1.1" 200 - "http://localhost:8080/history"; "Mozilla/5.0 (X11; Ubuntu; 
> Linux x86_64;
> rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:48:31 +0200] "POST /root/history_item_updates 
> HTTP/1.1" 200 - "http://localhost:8080/history"; "Mozilla/5.0 (X11; Ubuntu; 
> Linux x86_64;
> rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:48:35 +0200] "POST /root/history_item_updates 
> HTTP/1.1" 200 - "http://localhost:8080/history"; "Mozilla/5.0 (X11; Ubuntu; 
> Linux x86_64;
> rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:48:39 +0200] "POST /root/history_item_updates 
> HTTP/1.1" 200 - "http://localhost:8080/history"; "Mozilla/5.0 (X11; Ubuntu; 
> Linux x86_64;
> rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:48:43 +0200] "POST /root/history_item_updates 
> HTTP/1.1" 200 - "http://localhost:8080/history"; "Mozilla/5.0 (X11; Ubuntu; 
> Linux x86_64;
> rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 127.0.0.1 - - [22/Feb/2012:09:48:47 +0200] "POST /root/history_item_updates 
> HTTP/1.1" 200 - "http://localhost:8080/history"; "Mozilla/5.0 (X11; Ubuntu; 
> Linux x86_64;
> rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
> 
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