Hi Luciano, I've moved this over to galaxy-dev since it concerns a local installation.
On Feb 26, 2012, at 6:19 PM, Luciano Cosme wrote: > I have python 2.7 and it seems to be the problem with it. Just formated the > partition I had linux and fresh install everything and still have same > problem. I did what is recommended here too. We use Python 2.7 in development and on the public site. If there is a specific problem with 2.7, could you provide details on what it is? > Check your Python version > > Galaxy's core functionality is compatible with Python versions 2.5, 2.6, and > 2.7. (Version 2.4 support was last included in the November 18, 2011 > Distribution). Before reporting bugs, please ensure that python --version > reports one of these three versions. If this is not the case, a simple > solution is to manipulate your shell's $PATH variable to place the correct > version first. This can be done for only Python by creating a new directory > at the front of $PATH and creating a symbolic link to python in that > directory: > > > Toggle line numbers > 1 % mkdir ~/galaxy-python > 2 % ln -s /path/to/python2.5 ~/galaxy-python/python > 3 % export PATH=~/galaxy-python:$PATH > > > > > > On Sat, Feb 25, 2012 at 5:50 PM, Luciano Cosme <cosme.sim...@gmail.com> wrote: > Hi Everyone, > I have been running a Local Galaxy instance for a long time, but now I am > having some problems with uploading data. I am getting the following error: > Can't create peek [Errno 2] No such file or directory: > '/home/koala2/galaxy-dist/database/files/000/dataset_13.dat' Can you make sure that you are starting with an empty /home/koala2/galaxy-dist/database/files/ directory? Is that directory writable by the user running Galaxy? The problem is that the tool runs and Galaxy does not detect failure (i.e. something output to STDERR) and yet the tool's output file does not exist. --nate > > > > > and from the Terminal: > 127.0.0.1 - - [25/Feb/2012:17:45:00 -0500] "POST > /library_common/library_item_updates HTTP/1.1" 200 - > "http://127.0.0.1:8080/library_common/browse_library? > > > > sort=name&operation=browse&f-description=All&f-name=All&f-deleted=False&cntrller=library_admin&async=false&show_item_checkboxes=false&webapp= > > > > galaxy&id=f2db41e1fa331b3e&page=1" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; > rv:10.0.2) Gecko/20100101 Firefox/10.0.2" > > > > > > I reinstalled Unbutu and still having the same issue. I also removed > Postgresql 9.1 and reinstalled it. I that it might be an issue with > postgresql and not Galaxy, but I am not an expert. > Any suggestions will be appreciated. > > > Thank you. > > > Luciano > > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
