On Thu, Mar 8, 2012 at 3:54 PM, Sivasangari NANDY <nsi...@hotmail.com> wrote: > Hi friends, > > I've got a problem, i'm not able to add a tool in ttol_conf.xml. Actually i > can see one tool that i've added but when i put the second Galaxy doesn't > take it into account : > > <section name="My_tools" id="mtools"> > <tool file="mytools/tool_countGC.xml" /> <!--This is okay--> > <tool file="mytools/rec_expression.xml" /> <!-- It's not working ! --> > </section> > > My paster.log gives that : > > galaxy.tools ERROR 2012-03-08 16:07:57,849 error reading tool from path: > mytools/rec_expression.xml > Traceback (most recent call last): > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", line 77, > in load_tool > tool = self.load_tool( os.path.join( self.tool_root_dir, path ) ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", line 169, > in load_tool > return ToolClass( config_file, root, self.app ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", line 340, > in __init__ > self.parse( root ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", line 446, > in parse > self.parse_inputs( root ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", line 528, > in parse_inputs > display, inputs = self.parse_input_page( page, enctypes ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", line 708, > in parse_input_page > inputs = self.parse_input_elem( input_elem, enctypes ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", line 801, > in parse_input_elem > param = self.parse_param_elem( elem, enctypes, context ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", line 813, > in parse_param_elem > param = ToolParameter.build( self, input_elem ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/parameters/basic.py", > line 159, in build > raise ValueError( "Unknown tool parameter type '%s'" % param_type ) > ValueError: Unknown tool parameter type 'string' > > Have you got aany idea ? > advance thanks,
It is telling you there is a problem understanding one of the parameters defined in mytools/rec_expression.xml - can you show us the input section of your XML file? Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
