Hi Sivasangari , your tools has an error. Tools with an error don't get listed. Can you show us the rec_expression.xml file? I guess you need to change the 'string' to 'text' or something like that.
Cheers, Bjoern > > I've got a problem, i'm not able to add a tool in ttol_conf.xml. > Actually i can see one tool that i've added but when i put the second > Galaxy doesn't take it into account : > > > <section name="My_tools" id="mtools"> > <tool file="mytools/tool_countGC.xml" /> <!--This is okay--> > <tool file="mytools/rec_expression.xml" /> <!-- It's not working ! > --> > </section> > > > My paster.log gives that : > > > galaxy.tools ERROR 2012-03-08 16:07:57,849 error reading tool from > path: mytools/rec_expression.xml > Traceback (most recent call last): > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", > line 77, in load_tool > tool = self.load_tool( os.path.join( self.tool_root_dir, path ) ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", > line 169, in load_tool > return ToolClass( config_file, root, self.app ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", > line 340, in __init__ > self.parse( root ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", > line 446, in parse > self.parse_inputs( root ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", > line 528, in parse_inputs > display, inputs = self.parse_input_page( page, enctypes ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", > line 708, in parse_input_page > inputs = self.parse_input_elem( input_elem, enctypes ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", > line 801, in parse_input_elem > param = self.parse_param_elem( elem, enctypes, context ) > File "/home/pmontalent/galaxy_dev/lib/galaxy/tools/__init__.py", > line 813, in parse_param_elem > param = ToolParameter.build( self, input_elem ) > File > "/home/pmontalent/galaxy_dev/lib/galaxy/tools/parameters/basic.py", > line 159, in build > raise ValueError( "Unknown tool parameter type '%s'" % param_type > ) > ValueError: Unknown tool parameter type 'string' > > > Have you got aany idea ? > advance thanks, > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ -- Björn Grüning Albert-Ludwigs-Universität Freiburg Institute of Pharmaceutical Sciences Pharmaceutical Bioinformatics Hermann-Herder-Strasse 9 D-79104 Freiburg i. Br. Tel.: +49 761 203-4872 Fax.: +49 761 203-97769 E-Mail: bjoern.gruen...@pharmazie.uni-freiburg.de Web: http://www.pharmaceutical-bioinformatics.org/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
