On Mar 12, 2012, at 11:42 PM, Huayan Gao wrote:

> Dear Nate, 
> 
> I have a follow up question for you. 
> 
> If I move galaxy out of my DocumentRoot "/var/www/html" to 
> "/home/galaxy/galaxy-dist" ,  how to set up my Apache server, that is, 
> httpd.conf file so I can access the website http://server/galaxy?
> I have a website http://server for something else. I've tried different ways 
> but no luck. 

Hi Huayan,

The configuration for this is shown under the heading:

    Serving Galaxy at a sub directory (such as /galaxy)

On the Apache Proxy wiki page:

    http://wiki.g2.bx.psu.edu/Admin/Config/Apache%20Proxy

--nate

> 
> 
> Best, 
> Huayan
> 
> 
> 
> On 14 Feb, 2012, at 1:21 AM, Nate Coraor wrote:
> 
>> On Feb 13, 2012, at 3:08 AM, Huayan Gao wrote:
>> 
>>> Hi Nate. 
>>> 
>>> I am ok now. 
>>> 
>>> The code I copied from wiki was using galaxy_dist, while my folder name is 
>>> galaxy-dist. 
>>> After I changed the path in the code, the problem solved. 
>> 
>> Hi Huayan,
>> 
>> I've updated the wiki to refer to galaxy-dist rather than galaxy_dist.  
>> Sorry for the confusion.
>> 
>> I would suggest moving galaxy out of /var/www/html.  From the documentation:
>> 
>>   Please note that Galaxy should never be located on disk inside Apache's 
>> DocumentRoot. By default, this would expose all of Galaxy (including 
>> datasets) to anyone on the web.
>> 
>> Galaxy is a proxied application and as such, only the static content like 
>> javascript and images are served directly by Apache (and this is set up with 
>> the RewriteRules), everything else is passed through to the Galaxy 
>> application via a proxied http connection.  Right now I could presumably use 
>> the URL http://server/galaxy/galaxy-dist/database/files/000/dataset_1.dat to 
>> view a dataset directly.
>> 
>> --nate
>> 
>>> 
>>> 
>>> 
>>> Best, 
>>> Huayan
>>> 
>>> 
>>> On 13 Feb, 2012, at 11:40 AM, Huayan Gao wrote:
>>> 
>>>> Hi Nate, 
>>>> 
>>>> I removed the proxy section in httpd file and got the following 
>>>> screenshot. It seems working but not in the way we expected. 
>>>> I will keep looking for the solution but do you know how to fix it?
>>>> 
>>>> It seems to say, "the file .../static/welcome.html is missing" or 
>>>> something like that. 
>>>> 
>>>> Thanks, 
>>>> Huayan 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> <Screen Shot 2012-02-13 at 11.37.57 AM.png>
>>>> 
>>>> 
>>>> 
>>>> On 10 Feb, 2012, at 10:28 AM, Huayan Gao wrote:
>>>> 
>>>>> Hi Nate, 
>>>>> 
>>>>> 
>>>>> Yes, I did follow the instructions. But I came to the question in 
>>>>> httpd.conf file. 
>>>>> I put galaxy-dist under my document root which is /var/www/html/. 
>>>>> When my server is up, I can access my UCSC genome browser mirror site 
>>>>> through my ip address, for example, http://61.244. xxx.xxx.
>>>>> Then how should I set up in httpd.conf file so I can access galaxy using 
>>>>> my ip address, for example, http://61.244. xxx.xxx/galaxy?
>>>>> 
>>>>> 
>>>>> 
>>>>> 
>>>>> Thanks, 
>>>>> Best, 
>>>>> Huayan
>>>>> 
>>>>> 
>>>>> 
>>>>> 
>>>>> On 10 Feb, 2012, at 1:17 AM, Nate Coraor wrote:
>>>>> 
>>>>>> On Feb 8, 2012, at 1:00 AM, Huayan Gao wrote:
>>>>>> 
>>>>>>> Dear Sir or Madam, 
>>>>>>> 
>>>>>>> I am installing a galaxy server on CentOS with UCSC Genome Browser 
>>>>>>> mirror site. The mirror site works well. I installed the galaxy in the 
>>>>>>> same server. 
>>>>>>> Now my question is: how to set up httpd.conf file so I can access both 
>>>>>>> websites(UCSC Genome Browser, and Galaxy) remotely? 
>>>>>> 
>>>>>> Hi Huayan,
>>>>>> 
>>>>>> Have you consulted the production server documentation?
>>>>>> 
>>>>>> http://usegalaxy.org/production
>>>>>> 
>>>>>> --nate
>>>>>> 
>>>>>>> 
>>>>>>> 
>>>>>>> 
>>>>>>> Best, 
>>>>>>> Huayan
>>>>>>> ___________________________________________________________
>>>>>>> Please keep all replies on the list by using "reply all"
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>>>>>>> 
>>>>>>> http://lists.bx.psu.edu/
>>>>>> 
>>>>> 
>>>> 
>>> 
>> 
> 
> 


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