On Mar 10, 2012, at 6:25 PM, Luciano Cosme wrote: > Hi, > I uploaded 11 files today (1 to 2Gb compressed files) to my local instance > without a problem (as admin). Then I got this error message below and it get > stuck at "This dataset is uploading" and I could not upload the last files. > Is there anything I can do to solve it? What I notice is that I can still > upload small files, before I concatenate them. I have 15 time points and some > of them have up to 20 files, so it is easier to concatenate them and them > upload. > Thank you.
Hi Luciano, Are you uploading via the browser? For larger files, it would likely be much easier to use one of the filesystem import methods. Also, I would suggest setting `debug = False` and `use_interactive = False` in universe_wsgi.ini. --nate > > Luciano > > > > 127.0.0.1 - - [10/Mar/2012:17:01:47 -0500] "POST > /library_common/upload_library_dataset HTTP/1.1" 500 - > "http://127.0.0.1:8080/library_common/upload_library_dataset?library_id=f597429621d6eb2b&show_deleted=False&cntrller=library_admin&folder_id=f597429621d6eb2b&use_panels=False"; > "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 > Firefox/10.0.2" > Debug at: http://127.0.0.1:8080/_debug/view/1331420472 > ---------------------------------------- > Exception happened during processing of request from ('127.0.0.1', 35033) > Traceback (most recent call last): > File > "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", > line 1053, in process_request_in_thread > self.finish_request(request, client_address) > File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request > self.RequestHandlerClass(request, client_address, self) > File "/usr/lib/python2.7/SocketServer.py", line 639, in __init__ > self.handle() > File > "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", > line 432, in handle > BaseHTTPRequestHandler.handle(self) > File "/usr/lib/python2.7/BaseHTTPServer.py", line 343, in handle > self.handle_one_request() > File > "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", > line 427, in handle_one_request > self.wsgi_execute() > File > "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", > line 287, in wsgi_execute > self.wsgi_start_response) > File > "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/urlmap.py", line > 202, in __call__ > return app(environ, start_response) > File > "/home/koala2/galaxy-central/lib/galaxy/web/framework/middleware/xforwardedhost.py", > line 21, in __call__ > return self.app( environ, start_response ) > File > "/home/koala2/galaxy-central/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/config.py", > line 164, in __call__ > app_iter = self.application(environ, start_response) > File > "/home/koala2/galaxy-central/lib/galaxy/web/framework/middleware/translogger.py", > line 68, in __call__ > return self.application(environ, replacement_start_response) > File > "/home/koala2/galaxy-central/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py", > line 226, in __call__ > return self.respond(environ, start_response) > File > "/home/koala2/galaxy-central/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py", > line 399, in respond > if self.xmlhttp_key in req.params: > File > "/home/koala2/galaxy-central/eggs/WebOb-0.8.5-py2.7.egg/webob/__init__.py", > line 900, in params > params = self.str_params > File > "/home/koala2/galaxy-central/eggs/WebOb-0.8.5-py2.7.egg/webob/__init__.py", > line 892, in str_params > return NestedMultiDict(self.str_GET, self.str_POST) > File > "/home/koala2/galaxy-central/eggs/WebOb-0.8.5-py2.7.egg/webob/__init__.py", > line 818, in str_POST > keep_blank_values=True) > File "/usr/lib/python2.7/cgi.py", line 508, in __init__ > self.read_multi(environ, keep_blank_values, strict_parsing) > File "/usr/lib/python2.7/cgi.py", line 632, in read_multi > environ, keep_blank_values, strict_parsing) > File "/usr/lib/python2.7/cgi.py", line 510, in __init__ > self.read_single() > File "/usr/lib/python2.7/cgi.py", line 647, in read_single > self.read_lines() > File "/home/koala2/galaxy-central/lib/galaxy/web/framework/base.py", line > 268, in read_lines > self.read_lines_to_outerboundary() > File "/usr/lib/python2.7/cgi.py", line 697, in read_lines_to_outerboundary > line = self.fp.readline(1<<16) > File > "/home/koala2/galaxy-central/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", > line 467, in readline > data = self.file.readline(self.length - self._consumed) > File "/usr/lib/python2.7/socket.py", line 412, in readline > bline = buf.readline(size) > OverflowError: signed integer is less than minimum > ---------------------------------------- > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
