I've got the same problem and when I looked at the data_transfer.log, I saw the following message:
2012-03-01 15:12:27,338 - datatx_13870 - (u'9c17d84742cd2acb63d88b5bd41d968f', u' http://xxx.xxx.xxx.xxx/api/samples/2d9035b3fc152403', {'sample_dataset_ids': ['a799d38679e985db', '33b43b4e7093c91f'], 'error_msg': '', 'update_type': 'sample_dataset_transfer_status', 'new_status': 'Adding to data library'}) 2012-03-01 15:12:27,342 - datatx_13870 - Error. <!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML 2.0//EN"> <html><head> <title>405 Method Not Allowed</title> </head><body> <h1>Method Not Allowed</h1> <p>The requested method PUT is not allowed for the URL /api/samples/2d9035b3fc152403.</p> <hr> Using Galaxy instead of Apache as the web server changed the sample status from "in queue" to complete but didn't add the downloaded files to the data library. Luobin On Mon, Mar 26, 2012 at 9:54 AM, Leandro Hermida <soft...@leandrohermida.com > wrote: > Dear Galaxy Dev, > > I've set up the Galaxy sample tracking system data transfer > functionality exactly as specified here > https://main.g2.bx.psu.edu/u/rkchak/p/data-transfer, but when I > attempt to transfer datasets it puts them into the queue and then > never seems to transfer anything. > > The galaxy_listener.log shows: > > 2012-03-26 17:16:24,515 - GalaxyAMQP - GALAXY LISTENER PID: 8738 - > {'config_file': 'universe_wsgi.ini', 'http_server_section': > 'server:main'} > 2012-03-26 17:16:24,518 - GalaxyAMQP - {'exchange': 'galaxy_exchange', > 'rabbitmqctl_path': > > '/gpfshpc/software/pmrdcdb/galaxy/rabbitmq/rabbitmq_server-2.8.1/sbin/rabbitmqctl', > 'userid': 'galaxy_dev', 'routing_key': 'bar_code_scanner', 'queue': > 'galaxy_queue', 'host': '127.0.0.1', 'virtual_host': > 'galaxy_dev_messaging_engine', 'password': 'mypassword', 'port': > '5672'} > 2012-03-26 17:16:24,565 - GalaxyAMQP - Connected to rabbitmq server - > 127.0.0.1:5672 > 2012-03-26 17:31:23,393 - GalaxyAMQP - MESSAGE RECVD: data_transfer > 2012-03-26 17:31:23,393 - GalaxyAMQP - DATA TRANSFER > 2012-03-26 17:31:23,401 - GalaxyAMQP - Started process (25406): python > > "/gpfshpc/software/pmrdcdb/galaxy/galaxy_dist_dev/scripts/galaxy_messaging/server/data_transfer.py" > " <data_transfer> > <galaxy_host>rd-galaxydev.app.pmi</galaxy_host> > <api_key>69bbd1a9b18eda2a888e9963820d8ef0</api_key> > <data_host>chp723</data_host> > <data_user>galaxy</data_user> > <data_password>mypassword</data_password> > <request_id>12</request_id> > <sample_id>12</sample_id> > <library_id>15</library_id> > <folder_id>52</folder_id> <dataset> > <dataset_id>10</dataset_id> > <name>ttt_2.fastq.gz</name> > <file>/gpfshpc/data/pmrdcdb/RNA-Seq/datasets/ttt-2.fastq.gz</file> > </dataset><dataset> > <dataset_id>9</dataset_id> > <name>ttt_1.fastq.gz</name> > <file>/gpfshpc/data/pmrdcdb/RNA-Seq/datasets/ttt-1.fastq.gz</file> > </dataset> </data_transfer>" > "universe_wsgi.ini" > > The FASTQ files are for testing and aren't very big (7.6 MB), what > could be going wrong? > > regards, > Leandro > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ >
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
