Hi I have noticed a few bugs while using trackster:
1. Multiple versions of visualisation saved. Quite often if I am
working on a visualisation I save periodically after adding tracks or
bookmarks or display options. When I go back to my visualisation menu
there are now several different versions of the same visualisation.
This doesn't always happen and I haven't figured out a direct cause yet.
2. While viewing bookmarked regions in my visualisation the whole
Galaxy process crashed and needed to be restarted. I found the error
below in paster.log.
Other than that Trackster has been a very valuable tool.
Thanks
Shaun Webb
Error - <type 'exceptions.IOError'>: [Errno 24] Too many open files:
'/storage/home/galaxy/galaxy_dist/database/files/068/dataset_68559.dat'
URL:
http://bifx-core.bio.ed.ac.uk:8080/tracks/converted_datasets_state?hda_ldda=hda&dataset_id=608cc0a44f2421fa&chrom=chrIX
File
'/storage/home/galaxy/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', line 143 in
__call__
app_iter = self.application(environ, start_response)
File
'/storage/home/galaxy/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in
__call__
return self.application(environ, start_response)
File
'/storage/home/galaxy/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in
__call__
return self.application(environ, start_response)
File
'/storage/home/galaxy/galaxy_dist/lib/galaxy/web/framework/base.py',
line 160 in __call__
body = method( trans, **kwargs )
File
'/storage/home/galaxy/galaxy_dist/lib/galaxy/web/framework/__init__.py', line
67 in decorator
return simplejson.dumps( func( self, trans, *args, **kwargs ) )
File
'/storage/home/galaxy/galaxy_dist/lib/galaxy/web/controllers/tracks.py', line
549 in converted_datasets_state
if not standalone_provider.has_data( chrom ):
File
'/storage/home/galaxy/galaxy_dist/lib/galaxy/visualization/tracks/data_providers.py', line 738 in
has_data
f, bbi = self._get_dataset()
File
'/storage/home/galaxy/galaxy_dist/lib/galaxy/visualization/tracks/data_providers.py', line 827 in
_get_dataset
f = open( self.converted_dataset.file_name )
IOError: [Errno 24] Too many open files:
'/storage/home/galaxy/galaxy_dist/database/files/068/dataset_68559.dat'
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