On Tue, Apr 17, 2012 at 1:00 PM, JIE CHEN <jiechenable1...@gmail.com> wrote:
> Thank you Nate. Your advise is very helpful to me. I installed the
> binaries like you said. Right now the binaries can be run successfully in
> the command line prompt. However i run into other problems :
> Failed to open input file:
> What i have done:
> 1. downloaded the .tar.gz file from the link you told me
> 2. tar zxvf name.tar.gz
> 3. then i found the three executables which are: taxBuilder, taxonomy2tree
> and tree2PS-fast.
> 4. made symbolic link of these files to the /usr/local/bin
> what else shall i do? Thanks.
> On Tue, Apr 17, 2012 at 10:36 AM, Nate Coraor <n...@bx.psu.edu> wrote:
>> On Apr 17, 2012, at 1:32 PM, JIE CHEN wrote:
>> > Dear all,
>> > I was trying to run the build-in function "Fetch taxonomic
>> representation" on my local instance of Galaxy, however it doesn't work as
>> I expect.
>> > The error message is:
>> > /bin/sh: taxBuilder: not found
>> > Anyone has seen this problem before? Please tell me what to do to solve
>> this problem? A lot of thanks
>> Hi Tyler,
>> Some Galaxy tools depend on external binaries not included in the Galaxy
>> distribution, and this is one of those tools. The full list and where to
>> get the tools from can be found here:
>> This specific tool can be found at:
>> > Tyler
>> > ___________________________________________________________
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